SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33287
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4621 O_SariASG1415_complete:A_SariASG_c13082_g1_i1
141bp
mediator_of_RNA_polymerase_II_transcription_subunit_31_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
4622 O_SariASG14160_complete:A_SariASG_c37782_g1_i3
163bp
4623 O_SariASG14161_complete:A_SariASG_c37782_g1_i3
110bp
4624 O_SariASG14162_5prime_partial:A_SariASG_c37783_g1_i1
129bp
PREDICTED:_ribonuclease_P_protein_subunit_p40-like_[Amyelois_transitella]
4625 O_SariASG14163_5prime_partial:A_SariASG_c37783_g1_i2
167bp
PREDICTED:_ribonuclease_P_protein_subunit_p40-like_[Amyelois_transitella]
4626 O_SariASG14164_5prime_partial:A_SariASG_c37783_g1_i3
106bp
PREDICTED:_ribonuclease_P_protein_subunit_p40-like_[Amyelois_transitella]
4627 O_SariASG14165_3prime_partial:A_SariASG_c37783_g2_i1
169bp
PREDICTED:_ribonuclease_P_protein_subunit_p40-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0004526 F ribonuclease P activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008033 P tRNA processing
GO:0008150 P biological_process
GO:0016787 F hydrolase activity
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4628 O_SariASG14166_complete:A_SariASG_c37787_g1_i2
533bp
CWF19-like_protein_1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
4629 O_SariASG14167_5prime_partial:A_SariASG_c37789_g1_i1
313bp
protein_regulator_of_cytokinesis_1_isoform_X2_[Bombyx_mori]
4630 O_SariASG14168_complete:A_SariASG_c37789_g1_i1
128bp
4631 O_SariASG14169_5prime_partial:A_SariASG_c37789_g1_i2
199bp
protein_regulator_of_cytokinesis_1_isoform_X2_[Bombyx_mori]
4632 O_SariASG1416_complete:A_SariASG_c13090_g1_i1
102bp
4633 O_SariASG14170_5prime_partial:A_SariASG_c37790_g1_i1
627bp
splicing_factor_3B_subunit_2_[Helicoverpa_armigera]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
4634 O_SariASG14171_complete:A_SariASG_c37790_g1_i1
184bp
4635 O_SariASG14172_5prime_partial:A_SariASG_c37790_g2_i1
160bp
formin-2_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030029 P actin filament-based process
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
4636 O_SariASG14173_5prime_partial:A_SariASG_c37790_g2_i2
335bp
protein_cappuccino_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030029 P actin filament-based process
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
4637 O_SariASG14174_5prime_partial:A_SariASG_c37790_g2_i4
516bp
PREDICTED:_formin-like_protein_12,_partial_[Papilio_machaon]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030029 P actin filament-based process
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
4638 O_SariASG14175_complete:A_SariASG_c37790_g2_i4
135bp
4639 O_SariASG14176_complete:A_SariASG_c37791_g1_i1
283bp
peroxisome_biogenesis_factor_2_[Helicoverpa_armigera]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005515 F protein binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006635 P fatty acid beta-oxidation
GO:0007031 P peroxisome organization
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016558 P protein import into peroxisome matrix
GO:0016593 C Cdc73/Paf1 complex
GO:0031648 P protein destabilization
GO:0046872 F metal ion binding
GO:0048147 P negative regulation of fibroblast proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
4640 O_SariASG14177_complete:A_SariASG_c37791_g1_i2
283bp
peroxisome_biogenesis_factor_2_[Helicoverpa_armigera]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005515 F protein binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006635 P fatty acid beta-oxidation
GO:0007031 P peroxisome organization
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016558 P protein import into peroxisome matrix
GO:0016593 C Cdc73/Paf1 complex
GO:0031648 P protein destabilization
GO:0046872 F metal ion binding
GO:0048147 P negative regulation of fibroblast proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
4641 O_SariASG14178_5prime_partial:A_SariASG_c37791_g1_i3
157bp
PREDICTED:_peroxisome_biogenesis_factor_2_[Amyelois_transitella]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003674 F molecular_function
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006635 P fatty acid beta-oxidation
GO:0007031 P peroxisome organization
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016558 P protein import into peroxisome matrix
GO:0016593 C Cdc73/Paf1 complex
GO:0031648 P protein destabilization
GO:0046872 F metal ion binding
GO:0048147 P negative regulation of fibroblast proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
4642 O_SariASG14179_5prime_partial:A_SariASG_c37792_g1_i4
101bp
Uncharacterized_protein_OBRU01_22231_[Operophtera_brumata]
4643 O_SariASG1417_internal:A_SariASG_c13091_g1_i1
108bp
uncharacterized_protein_LOC110374342_[Helicoverpa_armigera]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
4644 O_SariASG14180_5prime_partial:A_SariASG_c37793_g1_i1
674bp
uncharacterized_protein_LOC110379212_isoform_X1_[Helicoverpa_armigera]
4645 O_SariASG14181_3prime_partial:A_SariASG_c37793_g1_i1
211bp
4646 O_SariASG14182_complete:A_SariASG_c37793_g1_i1
101bp
4647 O_SariASG14183_5prime_partial:A_SariASG_c37793_g1_i3
673bp
uncharacterized_protein_LOC110379212_isoform_X2_[Helicoverpa_armigera]
4648 O_SariASG14184_3prime_partial:A_SariASG_c37793_g1_i3
211bp
4649 O_SariASG14185_complete:A_SariASG_c37793_g1_i3
101bp
4650 O_SariASG14186_complete:A_SariASG_c37793_g1_i4
638bp
uncharacterized_protein_LOC110379212_isoform_X3_[Helicoverpa_armigera]
previous next from show/33287

- SilkBase 1999-2023 -