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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
931 O_BomaMSG10839_complete:A_BomaMSG_c21686_g1_i3
311bp
3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
932 O_BomaMSG1083_3prime_partial:A_BomaMSG_c4673_g1_i1
311bp
H/ACA_ribonucleoprotein_complex_subunit_4_[Bombyx_mori]
GO:0000495 P box H/ACA RNA 3'-end processing
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0007281 P germ cell development
GO:0009267 P cellular response to starvation
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0031118 P rRNA pseudouridine synthesis
GO:0031120 P snRNA pseudouridine synthesis
GO:0031429 C box H/ACA snoRNP complex
GO:0035220 P wing disc development
GO:0042254 P ribosome biogenesis
GO:1990481 P mRNA pseudouridine synthesis
933 O_BomaMSG10840_5prime_partial:A_BomaMSG_c21687_g1_i1
574bp
ataxin-10_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007399 P nervous system development
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030425 C dendrite
GO:0031175 P neuron projection development
GO:0042384 P cilium assembly
GO:0042802 F identical protein binding
GO:0043025 C neuronal cell body
GO:0048471 C perinuclear region of cytoplasm
GO:0070207 P protein homotrimerization
934 O_BomaMSG10841_complete:A_BomaMSG_c21687_g1_i1
147bp
935 O_BomaMSG10842_5prime_partial:A_BomaMSG_c21687_g1_i2
198bp
ataxin-10_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007399 P nervous system development
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030425 C dendrite
GO:0031175 P neuron projection development
GO:0042384 P cilium assembly
GO:0042802 F identical protein binding
GO:0043025 C neuronal cell body
GO:0048471 C perinuclear region of cytoplasm
GO:0070207 P protein homotrimerization
936 O_BomaMSG10843_internal:A_BomaMSG_c21688_g1_i1
153bp
golgin_subfamily_A_member_1_isoform_X2_[Bombyx_mori]
937 O_BomaMSG10844_3prime_partial:A_BomaMSG_c21688_g1_i2
162bp
golgin_subfamily_A_member_1_isoform_X2_[Bombyx_mori]
938 O_BomaMSG10845_complete:A_BomaMSG_c21689_g1_i1
357bp
syntaxin_5A_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0000281 P mitotic cytokinesis
GO:0000902 P cell morphogenesis
GO:0005484 F SNAP receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006878 P cellular copper ion homeostasis
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006906 P vesicle fusion
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007112 P male meiosis cytokinesis
GO:0007269 P neurotransmitter secretion
GO:0007283 P spermatogenesis
GO:0008283 P cell population proliferation
GO:0009306 P protein secretion
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045930 P negative regulation of mitotic cell cycle
GO:0048278 P vesicle docking
GO:0055070 P copper ion homeostasis
GO:0060305 P regulation of cell diameter
GO:0098793 C presynapse
939 O_BomaMSG10846_5prime_partial:A_BomaMSG_c21689_g1_i2
385bp
syntaxin_5A_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0000281 P mitotic cytokinesis
GO:0000902 P cell morphogenesis
GO:0005484 F SNAP receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006878 P cellular copper ion homeostasis
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006906 P vesicle fusion
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007112 P male meiosis cytokinesis
GO:0007269 P neurotransmitter secretion
GO:0007283 P spermatogenesis
GO:0008283 P cell population proliferation
GO:0009306 P protein secretion
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045930 P negative regulation of mitotic cell cycle
GO:0048278 P vesicle docking
GO:0055070 P copper ion homeostasis
GO:0060305 P regulation of cell diameter
GO:0098793 C presynapse
940 O_BomaMSG10847_complete:A_BomaMSG_c21689_g1_i4
367bp
syntaxin_5A_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0000281 P mitotic cytokinesis
GO:0000902 P cell morphogenesis
GO:0005484 F SNAP receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006878 P cellular copper ion homeostasis
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006906 P vesicle fusion
GO:0006909 P phagocytosis
GO:0007030 P Golgi organization
GO:0007112 P male meiosis cytokinesis
GO:0007269 P neurotransmitter secretion
GO:0007283 P spermatogenesis
GO:0008283 P cell population proliferation
GO:0009306 P protein secretion
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045930 P negative regulation of mitotic cell cycle
GO:0048278 P vesicle docking
GO:0055070 P copper ion homeostasis
GO:0060305 P regulation of cell diameter
GO:0098793 C presynapse
941 O_BomaMSG10848_3prime_partial:A_BomaMSG_c21691_g1_i1
124bp
uncharacterized_protein_LOC110383347_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
942 O_BomaMSG10849_3prime_partial:A_BomaMSG_c21691_g1_i2
124bp
uncharacterized_protein_LOC110383347_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
943 O_BomaMSG1084_complete:A_BomaMSG_c4678_g1_i1
195bp
ribosomal_protein_S9_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000228 C nuclear chromosome
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005840 C ribosome
GO:0006412 P translation
GO:0007052 P mitotic spindle organization
GO:0015935 C small ribosomal subunit
GO:0019843 F rRNA binding
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0045903 P positive regulation of translational fidelity
944 O_BomaMSG10850_3prime_partial:A_BomaMSG_c21691_g1_i4
124bp
uncharacterized_protein_LOC110383347_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
945 O_BomaMSG10851_3prime_partial:A_BomaMSG_c21693_g1_i1
201bp
protein_CASC3_isoform_X3_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0035145 C exon-exon junction complex
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
946 O_BomaMSG10852_complete:A_BomaMSG_c21693_g1_i1
109bp
947 O_BomaMSG10853_internal:A_BomaMSG_c21696_g1_i1
280bp
acylglycerol_kinase,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001727 F lipid kinase activity
GO:0001729 F ceramide kinase activity
GO:0004143 F diacylglycerol kinase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0031966 C mitochondrial membrane
GO:0035338 P long-chain fatty-acyl-CoA biosynthetic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0046486 P glycerolipid metabolic process
GO:0046513 P ceramide biosynthetic process
GO:0046834 P lipid phosphorylation
GO:0047620 F acylglycerol kinase activity
948 O_BomaMSG10854_3prime_partial:A_BomaMSG_c21696_g1_i2
390bp
acylglycerol_kinase,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001727 F lipid kinase activity
GO:0001729 F ceramide kinase activity
GO:0004143 F diacylglycerol kinase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0031966 C mitochondrial membrane
GO:0035338 P long-chain fatty-acyl-CoA biosynthetic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0046486 P glycerolipid metabolic process
GO:0046513 P ceramide biosynthetic process
GO:0046834 P lipid phosphorylation
GO:0047620 F acylglycerol kinase activity
949 O_BomaMSG10855_3prime_partial:A_BomaMSG_c21698_g1_i1
169bp
geminin_[Bombyx_mori]
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006275 P regulation of DNA replication
GO:0006461 P protein-containing complex assembly
GO:0007049 P cell cycle
GO:0008156 P negative regulation of DNA replication
GO:0009887 P animal organ morphogenesis
GO:0042826 F histone deacetylase binding
GO:0045786 P negative regulation of cell cycle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0070491 F DNA-binding transcription factor binding
950 O_BomaMSG10856_5prime_partial:A_BomaMSG_c21698_g1_i1
106bp
951 O_BomaMSG10857_complete:A_BomaMSG_c21699_g1_i1
157bp
nucleoporin_NUP53_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003697 F single-stranded DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0006999 P nuclear pore organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0044613 C nuclear pore central transport channel
GO:0044615 C nuclear pore nuclear basket
GO:0045111 C intermediate filament cytoskeleton
GO:0051028 P mRNA transport
GO:0055085 P transmembrane transport
952 O_BomaMSG10858_3prime_partial:A_BomaMSG_c21700_g1_i1
156bp
uncharacterized_protein_LOC101742101_[Bombyx_mori]
953 O_BomaMSG10859_complete:A_BomaMSG_c21700_g1_i1
101bp
954 O_BomaMSG1085_5prime_partial:A_BomaMSG_c4679_g1_i1
112bp
uncharacterized_protein_LOC110384829_[Bombyx_mori]
955 O_BomaMSG10860_internal:A_BomaMSG_c21700_g1_i2
411bp
uncharacterized_protein_LOC101742101_[Bombyx_mori]
956 O_BomaMSG10861_5prime_partial:A_BomaMSG_c21700_g1_i2
167bp
957 O_BomaMSG10862_internal:A_BomaMSG_c21700_g1_i3
406bp
uncharacterized_protein_LOC101742101_[Bombyx_mori]
958 O_BomaMSG10863_5prime_partial:A_BomaMSG_c21700_g1_i3
162bp
959 O_BomaMSG10864_internal:A_BomaMSG_c21700_g1_i4
107bp
uncharacterized_protein_LOC101742101_[Bombyx_mori]
960 O_BomaMSG10865_internal:A_BomaMSG_c21700_g1_i5
819bp
uncharacterized_protein_LOC101742101_[Bombyx_mori]
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