Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
361	O_BomaMSG10325_internal:A_BomaMSG_c21346_g1_i1 105bp		polyprotein,_partial_[Bombyx_mori]	GO:0003964 F RNA-directed DNA polymerase activity GO:0005575 C cellular_component GO:0006278 P RNA-dependent DNA biosynthetic process GO:0006313 P transposition, DNA-mediated GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity
362	O_BomaMSG10326_complete:A_BomaMSG_c21347_g1_i1 260bp		TGF_beta-inducible_nuclear_protein_1_isoform_X1_[Bombyx_mori]	GO:0000460 P maturation of 5.8S rRNA GO:0000470 P maturation of LSU-rRNA GO:0005634 C nucleus GO:0005730 C nucleolus GO:0006364 P rRNA processing GO:0030529 C ribonucleoprotein complex GO:0030687 C preribosome, large subunit precursor GO:0042254 P ribosome biogenesis GO:0044822 F RNA binding
363	O_BomaMSG10327_complete:A_BomaMSG_c21347_g1_i1 119bp
364	O_BomaMSG10328_complete:A_BomaMSG_c21347_g1_i2 260bp		TGF_beta-inducible_nuclear_protein_1_isoform_X1_[Bombyx_mori]	GO:0000460 P maturation of 5.8S rRNA GO:0000470 P maturation of LSU-rRNA GO:0005634 C nucleus GO:0005730 C nucleolus GO:0006364 P rRNA processing GO:0030529 C ribonucleoprotein complex GO:0030687 C preribosome, large subunit precursor GO:0042254 P ribosome biogenesis GO:0044822 F RNA binding
365	O_BomaMSG10329_complete:A_BomaMSG_c21347_g1_i2 119bp
366	O_BomaMSG1032_5prime_partial:A_BomaMSG_c4451_g1_i1 121bp		uncharacterized_protein_LOC101735588_[Bombyx_mori]
367	O_BomaMSG10330_3prime_partial:A_BomaMSG_c21349_g1_i1 338bp		STE20-related_kinase_adapter_protein_alpha_[Bombyx_mori]	GO:0004672 F protein kinase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0006611 P protein export from nucleus GO:0007049 P cell cycle GO:0030295 F protein kinase activator activity GO:0032147 P activation of protein kinase activity
368	O_BomaMSG10331_5prime_partial:A_BomaMSG_c21349_g1_i1 214bp
369	O_BomaMSG10332_complete:A_BomaMSG_c21350_g1_i1 407bp		lanC-like_protein_1_isoform_X1_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0004930 F G protein-coupled receptor activity GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005886 C plasma membrane GO:0005887 C integral component of plasma membrane GO:0007186 P G protein-coupled receptor signaling pathway GO:0008152 P metabolic process GO:0008270 F zinc ion binding GO:0016020 C membrane GO:0017124 F SH3 domain binding GO:0043295 F glutathione binding GO:0046872 F metal ion binding GO:0050750 F low-density lipoprotein particle receptor binding GO:0070062 C extracellular exosome
370	O_BomaMSG10333_internal:A_BomaMSG_c21351_g1_i1 331bp		diptheria_toxin_resistance_protein_[Bombyx_mori]	GO:0017183 P peptidyl-diphthamide biosynthetic process from peptidyl-histidine
371	O_BomaMSG10334_internal:A_BomaMSG_c21351_g1_i2 124bp		diptheria_toxin_resistance_protein_[Bombyx_mori]	GO:0017183 P peptidyl-diphthamide biosynthetic process from peptidyl-histidine
372	O_BomaMSG10335_internal:A_BomaMSG_c21354_g1_i1 202bp		protein_Gawky_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000932 C P-body GO:0001700 P embryonic development via the syncytial blastoderm GO:0003723 F RNA binding GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0006402 P mRNA catabolic process GO:0006417 P regulation of translation GO:0007275 P multicellular organism development GO:0031047 P gene silencing by RNA GO:0032880 P regulation of protein localization GO:0035195 P gene silencing by miRNA GO:0045475 P locomotor rhythm
373	O_BomaMSG10336_3prime_partial:A_BomaMSG_c21357_g2_i1 192bp		uncharacterized_protein_C15orf41_homolog_isoform_X1_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0008150 P biological_process
374	O_BomaMSG10337_internal:A_BomaMSG_c21358_g1_i1 155bp		uncharacterized_protein_LOC101744779_[Bombyx_mori]
375	O_BomaMSG10338_3prime_partial:A_BomaMSG_c21358_g1_i2 240bp		uncharacterized_protein_LOC101744779_[Bombyx_mori]
376	O_BomaMSG10339_internal:A_BomaMSG_c21359_g1_i1 295bp		integrator_complex_subunit_4_[Bombyx_mori]	GO:0005634 C nucleus
377	O_BomaMSG1033_internal:A_BomaMSG_c4470_g1_i1 107bp		probable_peroxisomal_acyl-coenzyme_A_oxidase_1_[Bombyx_mori]	GO:0000062 F fatty-acyl-CoA binding GO:0003995 F acyl-CoA dehydrogenase activity GO:0003997 F acyl-CoA oxidase activity GO:0005777 C peroxisome GO:0006091 P generation of precursor metabolites and energy GO:0006629 P lipid metabolic process GO:0006631 P fatty acid metabolic process GO:0006635 P fatty acid beta-oxidation GO:0006693 P prostaglandin metabolic process GO:0008152 P metabolic process GO:0009055 F electron transfer activity GO:0016491 F oxidoreductase activity GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors GO:0019395 P fatty acid oxidation GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase GO:0050660 F flavin adenine dinucleotide binding GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor GO:0055088 P lipid homeostasis GO:0055114 P obsolete oxidation-reduction process
378	O_BomaMSG10340_complete:A_BomaMSG_c21359_g1_i1 120bp
379	O_BomaMSG10341_5prime_partial:A_BomaMSG_c21360_g1_i2 173bp
380	O_BomaMSG10342_5prime_partial:A_BomaMSG_c21360_g1_i2 142bp
381	O_BomaMSG10343_3prime_partial:A_BomaMSG_c21362_g1_i1 203bp		SET_and_MYND_domain-containing_protein_4_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0008150 P biological_process GO:0008168 F methyltransferase activity GO:0016740 F transferase activity GO:0032259 P methylation GO:0046872 F metal ion binding
382	O_BomaMSG10344_3prime_partial:A_BomaMSG_c21363_g1_i1 244bp		tensin-2_isoform_X2_[Bombyx_mori]	GO:0001822 P kidney development GO:0004721 F phosphoprotein phosphatase activity GO:0005515 F protein binding GO:0005622 C intracellular anatomical structure GO:0005886 C plasma membrane GO:0005925 C focal adhesion GO:0006470 P protein dephosphorylation GO:0008285 P negative regulation of cell population proliferation GO:0014850 P response to muscle activity GO:0016020 C membrane GO:0016787 F hydrolase activity GO:0019725 P cellular homeostasis GO:0019900 F kinase binding GO:0030054 C cell junction GO:0032963 P collagen metabolic process GO:0035264 P multicellular organism growth GO:0035556 P intracellular signal transduction GO:0046872 F metal ion binding GO:0048871 P multicellular organismal homeostasis
383	O_BomaMSG10345_3prime_partial:A_BomaMSG_c21363_g1_i2 191bp		tensin_isoform_X4_[Bombyx_mori]
384	O_BomaMSG10346_3prime_partial:A_BomaMSG_c21363_g1_i2 102bp
385	O_BomaMSG10347_5prime_partial:A_BomaMSG_c21364_g1_i1 137bp		PREDICTED:_MOB_kinase_activator_1A_[Jaculus_jaculus]
386	O_BomaMSG10348_complete:A_BomaMSG_c21364_g1_i1 112bp		PREDICTED:_RING-box_protein_2_[Papilio_xuthus]	GO:0005507 F copper ion binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0008270 F zinc ion binding GO:0016567 P protein ubiquitination GO:0019788 F NEDD8 transferase activity GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process GO:0031462 C Cul2-RING ubiquitin ligase complex GO:0031463 C Cul3-RING ubiquitin ligase complex GO:0031466 C Cul5-RING ubiquitin ligase complex GO:0031467 C Cul7-RING ubiquitin ligase complex GO:0042787 P ubiquitin-dependent protein catabolic process GO:0043224 C nuclear SCF ubiquitin ligase complex GO:0045116 P protein neddylation GO:0046872 F metal ion binding GO:0051775 P response to redox state GO:0061630 F ubiquitin protein ligase activity GO:0080008 C Cul4-RING E3 ubiquitin ligase complex GO:0097602 F cullin family protein binding
387	O_BomaMSG10349_3prime_partial:A_BomaMSG_c21365_g1_i2 152bp		phosphatidylinositol-glycan_biosynthesis_class_X_protein_isoform_X2_[Bombyx_mori]	GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006506 P GPI anchor biosynthetic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016254 P preassembly of GPI anchor in ER membrane
388	O_BomaMSG1034_internal:A_BomaMSG_c4477_g1_i1 99bp		LOW_QUALITY_PROTEIN:_papilin_[Bombyx_mori]	GO:0004222 F metalloendopeptidase activity GO:0004867 F serine-type endopeptidase inhibitor activity GO:0005201 F extracellular matrix structural constituent GO:0005576 C extracellular region GO:0005578 C extracellular matrix GO:0005604 C basement membrane GO:0006508 P proteolysis GO:0007275 P multicellular organism development GO:0008233 F peptidase activity GO:0008237 F metallopeptidase activity GO:0008270 F zinc ion binding GO:0010466 P negative regulation of peptidase activity GO:0010951 P negative regulation of endopeptidase activity GO:0030198 P extracellular matrix organization GO:0030414 F peptidase inhibitor activity GO:0031012 C extracellular matrix
389	O_BomaMSG10350_3prime_partial:A_BomaMSG_c21366_g1_i1 259bp		ran-binding_protein_3_[Bombyx_mori]	GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006810 P transport GO:0015031 P protein transport GO:0046907 P intracellular transport
390	O_BomaMSG10351_internal:A_BomaMSG_c21366_g1_i2 135bp		ran-binding_protein_3_[Bombyx_mori]	GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006810 P transport GO:0015031 P protein transport GO:0046907 P intracellular transport