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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3451 O_BomaMSG13106_complete:A_BomaMSG_c22862_g1_i1
248bp
RNA-binding_protein_pno1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008150 P biological_process
3452 O_BomaMSG13107_5prime_partial:A_BomaMSG_c22863_g1_i1
219bp
protein_FAM192A_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0008150 P biological_process
3453 O_BomaMSG13108_complete:A_BomaMSG_c22863_g1_i2
248bp
protein_FAM192A_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0008150 P biological_process
3454 O_BomaMSG13109_complete:A_BomaMSG_c22864_g1_i1
463bp
FAD-dependent_oxidoreductase_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
3455 O_BomaMSG1310_5prime_partial:A_BomaMSG_c5420_g1_i1
121bp
uncharacterized_protein_LOC101738377_isoform_X3_[Bombyx_mori]
3456 O_BomaMSG13110_complete:A_BomaMSG_c22864_g1_i1
146bp
3457 O_BomaMSG13111_3prime_partial:A_BomaMSG_c22866_g1_i1
859bp
meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005777 C peroxisome
GO:0010468 P regulation of gene expression
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
3458 O_BomaMSG13112_complete:A_BomaMSG_c22866_g1_i1
122bp
3459 O_BomaMSG13113_complete:A_BomaMSG_c22869_g1_i1
279bp
E3_ubiquitin-protein_ligase_RNF13_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005637 C nuclear inner membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031902 C late endosome membrane
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
3460 O_BomaMSG13114_complete:A_BomaMSG_c22869_g1_i1
115bp
3461 O_BomaMSG13115_5prime_partial:A_BomaMSG_c22869_g1_i2
175bp
E3_ubiquitin-protein_ligase_RNF13_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005765 C lysosomal membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:0031902 C late endosome membrane
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
3462 O_BomaMSG13116_complete:A_BomaMSG_c22869_g1_i3
397bp
E3_ubiquitin-protein_ligase_RNF13_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005637 C nuclear inner membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031902 C late endosome membrane
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
3463 O_BomaMSG13117_complete:A_BomaMSG_c22869_g1_i3
119bp
3464 O_BomaMSG13118_complete:A_BomaMSG_c22869_g1_i3
115bp
3465 O_BomaMSG13119_complete:A_BomaMSG_c22870_g1_i1
137bp
uncharacterized_protein_LOC101746409_isoform_X3_[Bombyx_mori]
3466 O_BomaMSG1311_complete:A_BomaMSG_c5424_g1_i1
149bp
uncharacterized_protein_LOC105842971_[Bombyx_mori]
3467 O_BomaMSG13120_3prime_partial:A_BomaMSG_c22871_g1_i1
303bp
ribosomal_RNA_processing_protein_1_homolog_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0005634 C nucleus
GO:0006364 P rRNA processing
GO:0016072 P rRNA metabolic process
GO:0030687 C preribosome, large subunit precursor
GO:0030688 C preribosome, small subunit precursor
3468 O_BomaMSG13121_5prime_partial:A_BomaMSG_c22871_g1_i1
101bp
3469 O_BomaMSG13122_internal:A_BomaMSG_c22871_g1_i2
237bp
ribosomal_RNA_processing_protein_1_homolog_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0005634 C nucleus
GO:0006364 P rRNA processing
GO:0016072 P rRNA metabolic process
GO:0030687 C preribosome, large subunit precursor
GO:0030688 C preribosome, small subunit precursor
3470 O_BomaMSG13123_5prime_partial:A_BomaMSG_c22871_g1_i2
101bp
3471 O_BomaMSG13124_complete:A_BomaMSG_c22872_g1_i1
270bp
dnaJ_(Hsp40)_homolog_10_isoform_X1_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0031072 F heat shock protein binding
GO:0032781 P positive regulation of ATP-dependent activity
GO:0035176 P social behavior
3472 O_BomaMSG13125_5prime_partial:A_BomaMSG_c22874_g1_i1
342bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101742325_[Bombyx_mori]
3473 O_BomaMSG13126_5prime_partial:A_BomaMSG_c22875_g1_i1
386bp
RAD50-interacting_protein_1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0048193 P Golgi vesicle transport
GO:0060628 P regulation of ER to Golgi vesicle-mediated transport
GO:0070939 C Dsl1/NZR complex
GO:1902504 P mitotic G2 DNA damage checkpoint signaling
3474 O_BomaMSG13127_complete:A_BomaMSG_c22875_g1_i1
113bp
3475 O_BomaMSG13128_5prime_partial:A_BomaMSG_c22875_g1_i2
209bp
RAD50-interacting_protein_1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0048193 P Golgi vesicle transport
GO:0060628 P regulation of ER to Golgi vesicle-mediated transport
GO:0070939 C Dsl1/NZR complex
GO:1902504 P mitotic G2 DNA damage checkpoint signaling
3476 O_BomaMSG13129_5prime_partial:A_BomaMSG_c22877_g1_i1
160bp
tRNA_pseudouridine(38/39)_synthase_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
3477 O_BomaMSG1312_internal:A_BomaMSG_c5427_g1_i1
182bp
cholinesterase_2_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
3478 O_BomaMSG13130_5prime_partial:A_BomaMSG_c22877_g1_i1
106bp
3479 O_BomaMSG13131_5prime_partial:A_BomaMSG_c22877_g1_i2
283bp
tRNA_pseudouridine(38/39)_synthase_[Bombyx_mori]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
3480 O_BomaMSG13132_5prime_partial:A_BomaMSG_c22877_g1_i2
106bp
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