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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3211 O_BomaMSG12891_complete:A_BomaMSG_c22755_g1_i3
302bp
3212 O_BomaMSG12892_complete:A_BomaMSG_c22755_g1_i3
108bp
3213 O_BomaMSG12893_3prime_partial:A_BomaMSG_c22756_g1_i2
264bp
probable_ATP-dependent_RNA_helicase_DDX17_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
3214 O_BomaMSG12894_internal:A_BomaMSG_c22756_g1_i3
118bp
probable_ATP-dependent_RNA_helicase_DDX17_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0009791 P post-embryonic development
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030331 F estrogen receptor binding
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0072358 P circulatory system development
GO:2001014 P regulation of skeletal muscle cell differentiation
3215 O_BomaMSG12895_internal:A_BomaMSG_c22756_g1_i4
249bp
probable_ATP-dependent_RNA_helicase_DDX17_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
3216 O_BomaMSG12896_internal:A_BomaMSG_c22757_g1_i1
211bp
uncharacterized_protein_LOC101743084_isoform_X2_[Bombyx_mori]
3217 O_BomaMSG12897_5prime_partial:A_BomaMSG_c22757_g1_i2
214bp
uncharacterized_protein_LOC101743084_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0012505 C endomembrane system
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0035556 P intracellular signal transduction
GO:0042552 P myelination
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
3218 O_BomaMSG12898_internal:A_BomaMSG_c22757_g1_i3
152bp
uncharacterized_protein_LOC101743084_isoform_X2_[Bombyx_mori]
3219 O_BomaMSG12899_complete:A_BomaMSG_c22758_g1_i1
251bp
uncharacterized_protein_LOC101737800_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001934 P positive regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005123 F death receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0010942 P positive regulation of cell death
GO:0012501 P programmed cell death
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0031264 C death-inducing signaling complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0032757 P positive regulation of interleukin-8 production
GO:0032760 P positive regulation of tumor necrosis factor production
GO:0034612 P response to tumor necrosis factor
GO:0036289 P peptidyl-serine autophosphorylation
GO:0042327 P positive regulation of phosphorylation
GO:0042802 F identical protein binding
GO:0043065 P positive regulation of apoptotic process
GO:0043068 P positive regulation of programmed cell death
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043124 P negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043234 C protein-containing complex
GO:0043235 C receptor complex
GO:0043410 P positive regulation of MAPK cascade
GO:0044257 P cellular protein catabolic process
GO:0045121 C membrane raft
GO:0045651 P positive regulation of macrophage differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046330 P positive regulation of JNK cascade
GO:0046777 P protein autophosphorylation
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051260 P protein homooligomerization
GO:0051291 P protein heterooligomerization
GO:0060545 P positive regulation of necroptotic process
GO:0070231 P T cell apoptotic process
GO:0070266 P necroptotic process
GO:0070513 F death domain binding
GO:0070926 P regulation of ATP:ADP antiporter activity
GO:0071356 P cellular response to tumor necrosis factor
GO:0071363 P cellular response to growth factor stimulus
GO:0097191 P extrinsic apoptotic signaling pathway
GO:0097342 C ripoptosome
GO:0097343 P ripoptosome assembly
GO:0097527 P necroptotic signaling pathway
GO:1901026 P ripoptosome assembly involved in necroptotic process
GO:1990000 P amyloid fibril formation
GO:2000377 P regulation of reactive oxygen species metabolic process
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
GO:2001238 P positive regulation of extrinsic apoptotic signaling pathway
GO:2001240 P negative regulation of extrinsic apoptotic signaling pathway in absence of ligand
3220 O_BomaMSG1289_complete:A_BomaMSG_c5317_g1_i1
118bp
3221 O_BomaMSG128_3prime_partial:A_BomaMSG_c611_g1_i1
110bp
PREDICTED:_uncharacterized_protein_LOC106711904_[Papilio_machaon]
3222 O_BomaMSG12900_5prime_partial:A_BomaMSG_c22760_g1_i1
141bp
3223 O_BomaMSG12901_5prime_partial:A_BomaMSG_c22761_g1_i1
343bp
coiled-coil_domain-containing_protein_47_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3224 O_BomaMSG12902_complete:A_BomaMSG_c22761_g1_i1
122bp
3225 O_BomaMSG12903_complete:A_BomaMSG_c22761_g2_i1
127bp
coiled-coil_domain-containing_protein_47_[Bombyx_mori]
3226 O_BomaMSG12904_3prime_partial:A_BomaMSG_c22762_g1_i1
641bp
ubiquitin_carboxyl-terminal_hydrolase_43_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
3227 O_BomaMSG12905_internal:A_BomaMSG_c22762_g1_i2
342bp
ubiquitin_carboxyl-terminal_hydrolase_43_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0019785 F ISG15-specific protease activity
GO:0019985 P translesion synthesis
GO:0036459 F thiol-dependent deubiquitinase
3228 O_BomaMSG12906_3prime_partial:A_BomaMSG_c22762_g1_i3
278bp
ubiquitin_carboxyl-terminal_hydrolase_43_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
3229 O_BomaMSG12907_3prime_partial:A_BomaMSG_c22763_g1_i2
206bp
heterogeneous_nuclear_ribonucleoprotein_K_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
3230 O_BomaMSG12908_complete:A_BomaMSG_c22763_g1_i2
103bp
3231 O_BomaMSG12909_5prime_partial:A_BomaMSG_c22766_g1_i1
361bp
protein_flightless-1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0007275 P multicellular organism development
GO:0007527 P adult somatic muscle development
GO:0007629 P flight behavior
GO:0010004 P gastrulation involving germ band extension
GO:0030036 P actin cytoskeleton organization
GO:0030239 P myofibril assembly
GO:0051014 P actin filament severing
3232 O_BomaMSG1290_complete:A_BomaMSG_c5317_g1_i2
238bp
uncharacterized_protein_LOC101741342_[Bombyx_mori]
3233 O_BomaMSG12910_5prime_partial:A_BomaMSG_c22766_g1_i2
753bp
protein_flightless-1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0007275 P multicellular organism development
GO:0007527 P adult somatic muscle development
GO:0007629 P flight behavior
GO:0010004 P gastrulation involving germ band extension
GO:0030036 P actin cytoskeleton organization
GO:0030239 P myofibril assembly
GO:0051014 P actin filament severing
3234 O_BomaMSG12911_complete:A_BomaMSG_c22767_g1_i1
520bp
fatty-acid_amide_hydrolase_2_isoform_X3_[Bombyx_mori]
GO:0005811 C lipid droplet
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0017064 F fatty acid amide hydrolase activity
GO:0019369 P arachidonic acid metabolic process
3235 O_BomaMSG12912_complete:A_BomaMSG_c22767_g1_i1
107bp
3236 O_BomaMSG12913_internal:A_BomaMSG_c22768_g1_i1
237bp
focadhesin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005925 C focal adhesion
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
3237 O_BomaMSG12914_3prime_partial:A_BomaMSG_c22768_g1_i1
176bp
3238 O_BomaMSG12915_5prime_partial:A_BomaMSG_c22768_g1_i2
215bp
focadhesin_[Bombyx_mori]
3239 O_BomaMSG12916_complete:A_BomaMSG_c22768_g1_i2
213bp
3240 O_BomaMSG12917_internal:A_BomaMSG_c22768_g2_i1
127bp
focadhesin_[Bombyx_mori]
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