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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2791 O_BomaMSG12512_internal:A_BomaMSG_c22592_g2_i2
119bp
protein_SREK1IP1-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005575 C cellular_component
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0046872 F metal ion binding
2792 O_BomaMSG12513_complete:A_BomaMSG_c22593_g1_i1
522bp
sorting_nexin-27_isoform_X1_[Bombyx_mori]
GO:0001772 C immunological synapse
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0008289 F lipid binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0030904 C retromer complex
GO:0031901 C early endosome membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0035091 F phosphatidylinositol binding
GO:0042493 P response to xenobiotic stimulus
GO:0071203 C WASH complex
GO:1990126 P endocytic recycling
2793 O_BomaMSG12514_complete:A_BomaMSG_c22593_g1_i1
327bp
2794 O_BomaMSG12515_complete:A_BomaMSG_c22593_g1_i1
126bp
2795 O_BomaMSG12516_5prime_partial:A_BomaMSG_c22593_g1_i2
431bp
sorting_nexin-27_isoform_X1_[Bombyx_mori]
GO:0001772 C immunological synapse
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0008289 F lipid binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0030904 C retromer complex
GO:0031901 C early endosome membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0035091 F phosphatidylinositol binding
GO:0042493 P response to xenobiotic stimulus
GO:0071203 C WASH complex
GO:1990126 P endocytic recycling
2796 O_BomaMSG12517_complete:A_BomaMSG_c22593_g1_i2
327bp
2797 O_BomaMSG12518_5prime_partial:A_BomaMSG_c22593_g1_i2
130bp
2798 O_BomaMSG12519_3prime_partial:A_BomaMSG_c22594_g1_i1
420bp
geranylgeranyl_transferase_type-2_subunit_alpha_[Bombyx_mori]
GO:0004659 F prenyltransferase activity
GO:0004663 F Rab geranylgeranyltransferase activity
GO:0005968 C Rab-protein geranylgeranyltransferase complex
GO:0008270 F zinc ion binding
GO:0008318 F protein prenyltransferase activity
GO:0016740 F transferase activity
GO:0017137 F small GTPase binding
GO:0018342 P protein prenylation
GO:0018344 P protein geranylgeranylation
2799 O_BomaMSG1251_3prime_partial:A_BomaMSG_c5182_g1_i1
169bp
uncharacterized_protein_LOC101739895_[Bombyx_mori]
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
2800 O_BomaMSG12520_complete:A_BomaMSG_c22594_g1_i1
143bp
2801 O_BomaMSG12521_complete:A_BomaMSG_c22596_g1_i1
384bp
cysteine_protease_ATG4B_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000422 P autophagy of mitochondrion
GO:0004197 F cysteine-type endopeptidase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006501 P C-terminal protein lipidation
GO:0006508 P proteolysis
GO:0006612 P protein targeting to membrane
GO:0006810 P transport
GO:0006914 P autophagy
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0015031 P protein transport
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0044804 P autophagy of nucleus
GO:0051697 P protein delipidation
2802 O_BomaMSG12522_5prime_partial:A_BomaMSG_c22597_g1_i2
233bp
inhibitor_of_growth_protein_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007141 P male meiosis I
GO:0007165 P signal transduction
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0016580 C Sin3 complex
GO:0016602 C CCAAT-binding factor complex
GO:0030317 P flagellated sperm motility
GO:0030511 P positive regulation of transforming growth factor beta receptor signaling pathway
GO:0032403 F protein-containing complex binding
GO:0035064 F methylated histone binding
GO:0035091 F phosphatidylinositol binding
GO:0040008 P regulation of growth
GO:0043065 P positive regulation of apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048133 P male germ-line stem cell asymmetric division
GO:0072520 P seminiferous tubule development
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:2000772 P regulation of cellular senescence
GO:2001020 P regulation of response to DNA damage stimulus
GO:2001234 P negative regulation of apoptotic signaling pathway
2803 O_BomaMSG12523_complete:A_BomaMSG_c22597_g1_i2
134bp
2804 O_BomaMSG12524_complete:A_BomaMSG_c22597_g1_i3
325bp
inhibitor_of_growth_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006606 P protein import into nucleus
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010941 P regulation of cell death
GO:0016568 P chromatin organization
GO:0035064 F methylated histone binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2805 O_BomaMSG12525_complete:A_BomaMSG_c22597_g1_i3
134bp
2806 O_BomaMSG12526_complete:A_BomaMSG_c22598_g1_i1
104bp
enhancer_of_rudimentary_homolog_[Bombyx_mori]
GO:0006221 P pyrimidine nucleotide biosynthetic process
GO:0007049 P cell cycle
GO:0045747 P positive regulation of Notch signaling pathway
2807 O_BomaMSG12527_3prime_partial:A_BomaMSG_c22599_g1_i1
296bp
probable_methyltransferase_BMT2_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016433 F rRNA (adenine) methyltransferase activity
GO:0016740 F transferase activity
GO:0031167 P rRNA methylation
GO:0032259 P methylation
2808 O_BomaMSG12528_complete:A_BomaMSG_c22600_g1_i1
435bp
26S_protease_regulatory_subunit_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000502 C proteasome complex
GO:0000932 C P-body
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0022624 C proteasome accessory complex
GO:0030163 P protein catabolic process
2809 O_BomaMSG12529_complete:A_BomaMSG_c22600_g1_i1
135bp
hypothetical_protein_CLUG_03378_[Clavispora_lusitaniae_ATCC_42720]
2810 O_BomaMSG1252_internal:A_BomaMSG_c5183_g1_i1
161bp
DENN_domain-containing_protein_4C_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0043547 P positive regulation of GTPase activity
2811 O_BomaMSG12530_complete:A_BomaMSG_c22600_g1_i1
111bp
hypothetical_protein_ALC62_00321_[Cyphomyrmex_costatus]
2812 O_BomaMSG12531_3prime_partial:A_BomaMSG_c22601_g1_i1
144bp
protein_groucho_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001106 F transcription corepressor activity
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0043234 C protein-containing complex
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
GO:0070491 F DNA-binding transcription factor binding
GO:0071837 F HMG box domain binding
GO:0071906 F CRD domain binding
GO:0090090 P negative regulation of canonical Wnt signaling pathway
2813 O_BomaMSG12532_3prime_partial:A_BomaMSG_c22601_g1_i2
148bp
protein_groucho_isoform_X9_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001106 F transcription corepressor activity
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0043234 C protein-containing complex
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
GO:0070491 F DNA-binding transcription factor binding
GO:0071837 F HMG box domain binding
GO:0071906 F CRD domain binding
GO:0090090 P negative regulation of canonical Wnt signaling pathway
2814 O_BomaMSG12533_3prime_partial:A_BomaMSG_c22601_g1_i3
153bp
protein_groucho_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001106 F transcription corepressor activity
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0043234 C protein-containing complex
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
GO:0070491 F DNA-binding transcription factor binding
GO:0071837 F HMG box domain binding
GO:0071906 F CRD domain binding
GO:0090090 P negative regulation of canonical Wnt signaling pathway
2815 O_BomaMSG12534_3prime_partial:A_BomaMSG_c22602_g1_i1
172bp
chitinase_domain-containing_protein_1_[Bombyx_mori]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0005975 P carbohydrate metabolic process
GO:0006032 P chitin catabolic process
GO:0006954 P inflammatory response
GO:0008061 F chitin binding
2816 O_BomaMSG12535_3prime_partial:A_BomaMSG_c22602_g1_i2
172bp
chitinase_domain-containing_protein_1_[Bombyx_mori]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0005975 P carbohydrate metabolic process
GO:0006032 P chitin catabolic process
GO:0006954 P inflammatory response
GO:0008061 F chitin binding
2817 O_BomaMSG12536_internal:A_BomaMSG_c22603_g1_i1
126bp
peroxisomal_membrane_protein_PMP34-like_isoform_X1_[Bombyx_mori]
GO:0000295 F adenine nucleotide transmembrane transporter activity
GO:0001561 P fatty acid alpha-oxidation
GO:0003735 F structural constituent of ribosome
GO:0005347 F ATP transmembrane transporter activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006412 P translation
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0015217 F ADP transmembrane transporter activity
GO:0015228 F coenzyme A transmembrane transporter activity
GO:0015230 F FAD transmembrane transporter activity
GO:0015866 P ADP transport
GO:0015867 P ATP transport
GO:0015908 P fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035349 P coenzyme A transmembrane transport
GO:0035350 P FAD transmembrane transport
GO:0043132 P NAD transport
GO:0043231 C intracellular membrane-bounded organelle
GO:0044610 F FMN transmembrane transporter activity
GO:0051087 F chaperone binding
GO:0051724 F NAD transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0080121 P AMP transport
GO:0080122 F AMP transmembrane transporter activity
GO:1901679 P nucleotide transmembrane transport
2818 O_BomaMSG12537_internal:A_BomaMSG_c22603_g1_i2
266bp
peroxisomal_membrane_protein_PMP34-like_isoform_X1_[Bombyx_mori]
GO:0000295 F adenine nucleotide transmembrane transporter activity
GO:0001561 P fatty acid alpha-oxidation
GO:0003735 F structural constituent of ribosome
GO:0005347 F ATP transmembrane transporter activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006412 P translation
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0015217 F ADP transmembrane transporter activity
GO:0015228 F coenzyme A transmembrane transporter activity
GO:0015230 F FAD transmembrane transporter activity
GO:0015866 P ADP transport
GO:0015867 P ATP transport
GO:0015908 P fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035349 P coenzyme A transmembrane transport
GO:0035350 P FAD transmembrane transport
GO:0043132 P NAD transport
GO:0043231 C intracellular membrane-bounded organelle
GO:0044610 F FMN transmembrane transporter activity
GO:0051087 F chaperone binding
GO:0051724 F NAD transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0080121 P AMP transport
GO:0080122 F AMP transmembrane transporter activity
GO:1901679 P nucleotide transmembrane transport
2819 O_BomaMSG12538_internal:A_BomaMSG_c22603_g1_i3
213bp
peroxisomal_membrane_protein_PMP34-like_isoform_X1_[Bombyx_mori]
GO:0000295 F adenine nucleotide transmembrane transporter activity
GO:0001561 P fatty acid alpha-oxidation
GO:0003735 F structural constituent of ribosome
GO:0005347 F ATP transmembrane transporter activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005779 C integral component of peroxisomal membrane
GO:0006412 P translation
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0015217 F ADP transmembrane transporter activity
GO:0015228 F coenzyme A transmembrane transporter activity
GO:0015230 F FAD transmembrane transporter activity
GO:0015866 P ADP transport
GO:0015867 P ATP transport
GO:0015908 P fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035349 P coenzyme A transmembrane transport
GO:0035350 P FAD transmembrane transport
GO:0043132 P NAD transport
GO:0043231 C intracellular membrane-bounded organelle
GO:0044610 F FMN transmembrane transporter activity
GO:0051087 F chaperone binding
GO:0051724 F NAD transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0080121 P AMP transport
GO:0080122 F AMP transmembrane transporter activity
GO:1901679 P nucleotide transmembrane transport
2820 O_BomaMSG12539_complete:A_BomaMSG_c22604_g1_i1
130bp
uncharacterized_protein_LOC101740630_[Bombyx_mori]
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