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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2731 O_BomaMSG12459_complete:A_BomaMSG_c22571_g2_i1
108bp
2732 O_BomaMSG1245_5prime_partial:A_BomaMSG_c5141_g1_i1
119bp
serpin_5_[Bombyx_mandarina]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005539 F glycosaminoglycan binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007566 P embryo implantation
GO:0007596 P blood coagulation
GO:0008201 F heparin binding
GO:0008285 P negative regulation of cell population proliferation
GO:0009314 P response to radiation
GO:0009611 P response to wounding
GO:0010466 P negative regulation of peptidase activity
GO:0010544 P negative regulation of platelet activation
GO:0010757 P negative regulation of plasminogen activation
GO:0010766 P negative regulation of sodium ion transport
GO:0010951 P negative regulation of endopeptidase activity
GO:0010955 P negative regulation of protein processing
GO:0010976 P positive regulation of neuron projection development
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0021683 P cerebellar granular layer morphogenesis
GO:0030154 P cell differentiation
GO:0030195 P negative regulation of blood coagulation
GO:0030308 P negative regulation of cell growth
GO:0030334 P regulation of cell migration
GO:0030414 F peptidase inhibitor activity
GO:0031012 C extracellular matrix
GO:0031091 C platelet alpha granule
GO:0031232 C extrinsic component of external side of plasma membrane
GO:0031594 C neuromuscular junction
GO:0032940 P secretion by cell
GO:0033363 P secretory granule organization
GO:0042177 P negative regulation of protein catabolic process
GO:0042628 P mating plug formation
GO:0043025 C neuronal cell body
GO:0045861 P negative regulation of proteolysis
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0048505 P regulation of timing of cell differentiation
GO:0048711 P positive regulation of astrocyte differentiation
GO:0050974 P detection of mechanical stimulus involved in sensory perception
GO:0051966 P regulation of synaptic transmission, glutamatergic
GO:0060291 P long-term synaptic potentiation
GO:0060384 P innervation
GO:0061108 P seminal vesicle epithelium development
GO:0061110 P dense core granule biogenesis
GO:0090331 P negative regulation of platelet aggregation
GO:1903561 C extracellular vesicle
2733 O_BomaMSG12460_3prime_partial:A_BomaMSG_c22572_g1_i1
486bp
protein_Peter_pan_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0001560 P regulation of cell growth by extracellular stimulus
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0019843 F rRNA binding
GO:0030687 C preribosome, large subunit precursor
GO:0044822 F RNA binding
2734 O_BomaMSG12461_complete:A_BomaMSG_c22573_g1_i1
516bp
integral_membrane_protein_GPR180_[Bombyx_mori]
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019236 P response to pheromone
2735 O_BomaMSG12462_complete:A_BomaMSG_c22573_g1_i1
140bp
2736 O_BomaMSG12463_5prime_partial:A_BomaMSG_c22573_g1_i2
477bp
integral_membrane_protein_GPR180_[Bombyx_mori]
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019236 P response to pheromone
2737 O_BomaMSG12464_complete:A_BomaMSG_c22573_g1_i2
140bp
2738 O_BomaMSG12465_3prime_partial:A_BomaMSG_c22574_g1_i1
403bp
uncharacterized_protein_LOC101746790_[Bombyx_mori]
2739 O_BomaMSG12466_5prime_partial:A_BomaMSG_c22575_g1_i2
504bp
nucleolar_and_coiled-body_phosphoprotein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006970 P response to osmotic stress
GO:0008134 F transcription factor binding
GO:0008139 F nuclear localization sequence binding
GO:0008284 P positive regulation of cell population proliferation
GO:0019904 F protein domain specific binding
GO:0033979 P box H/ACA RNA metabolic process
GO:0034512 F box C/D RNA binding
GO:0034513 F box H/ACA snoRNA binding
GO:0042306 P regulation of protein import into nucleus
GO:0045893 P positive regulation of transcription, DNA-templated
2740 O_BomaMSG12467_complete:A_BomaMSG_c22575_g1_i2
138bp
2741 O_BomaMSG12468_5prime_partial:A_BomaMSG_c22575_g1_i2
105bp
2742 O_BomaMSG12469_internal:A_BomaMSG_c22575_g1_i3
442bp
nucleolar_and_coiled-body_phosphoprotein_1_[Bombyx_mori]
2743 O_BomaMSG1246_3prime_partial:A_BomaMSG_c5142_g1_i1
163bp
heterogeneous_nuclear_ribonucleoprotein_L_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0010467 P gene expression
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0035770 C ribonucleoprotein granule
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045120 C pronucleus
GO:0070062 C extracellular exosome
GO:0097157 F pre-mRNA intronic binding
2744 O_BomaMSG12470_complete:A_BomaMSG_c22575_g1_i3
138bp
2745 O_BomaMSG12471_5prime_partial:A_BomaMSG_c22575_g1_i3
105bp
2746 O_BomaMSG12472_3prime_partial:A_BomaMSG_c22577_g1_i1
315bp
speckle-type_POZ_protein-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016567 P protein ubiquitination
GO:0031397 P negative regulation of protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
2747 O_BomaMSG12473_3prime_partial:A_BomaMSG_c22577_g1_i2
315bp
speckle-type_POZ_protein-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016567 P protein ubiquitination
GO:0031397 P negative regulation of protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
2748 O_BomaMSG12474_3prime_partial:A_BomaMSG_c22578_g1_i1
208bp
cell_division_protein_isoform_X1_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0002128 P tRNA nucleoside ribose methylation
GO:0002181 P cytoplasmic translation
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
2749 O_BomaMSG12475_internal:A_BomaMSG_c22578_g1_i2
230bp
cell_division_protein_isoform_X1_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0002128 P tRNA nucleoside ribose methylation
GO:0002181 P cytoplasmic translation
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
2750 O_BomaMSG12476_internal:A_BomaMSG_c22578_g1_i4
114bp
FtsJ-like_methyltransferase-like_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0002128 P tRNA nucleoside ribose methylation
GO:0002181 P cytoplasmic translation
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008175 F tRNA methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
2751 O_BomaMSG12477_internal:A_BomaMSG_c22580_g1_i1
773bp
bromodomain_adjacent_to_zinc_finger_domain_protein_2B_isoform_X7_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
2752 O_BomaMSG12478_5prime_partial:A_BomaMSG_c22580_g1_i1
137bp
2753 O_BomaMSG12479_5prime_partial:A_BomaMSG_c22580_g1_i1
122bp
2754 O_BomaMSG1247_3prime_partial:A_BomaMSG_c5144_g1_i1
121bp
zinc_finger_protein_271_isoform_X1_[Bombyx_mori]
2755 O_BomaMSG12480_internal:A_BomaMSG_c22580_g1_i2
797bp
uncharacterized_protein_LOC101745407_isoform_X6_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
2756 O_BomaMSG12481_5prime_partial:A_BomaMSG_c22580_g1_i2
145bp
2757 O_BomaMSG12482_5prime_partial:A_BomaMSG_c22580_g1_i2
137bp
2758 O_BomaMSG12483_5prime_partial:A_BomaMSG_c22581_g1_i2
478bp
retinoblastoma-like_protein_2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0010629 P negative regulation of gene expression
GO:0016568 P chromatin organization
GO:0043550 P regulation of lipid kinase activity
GO:0051726 P regulation of cell cycle
GO:1990841 F promoter-specific chromatin binding
2759 O_BomaMSG12484_complete:A_BomaMSG_c22582_g1_i1
225bp
ras-related_protein_Rab-9B_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032880 P regulation of protein localization
GO:0042147 P retrograde transport, endosome to Golgi
GO:0045335 C phagocytic vesicle
GO:0045921 P positive regulation of exocytosis
GO:0052405 P negative regulation by host of symbiont catalytic activity
GO:0070062 C extracellular exosome
2760 O_BomaMSG12485_5prime_partial:A_BomaMSG_c22582_g1_i2
230bp
ras-related_protein_Rab-9B_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032880 P regulation of protein localization
GO:0042147 P retrograde transport, endosome to Golgi
GO:0045335 C phagocytic vesicle
GO:0045921 P positive regulation of exocytosis
GO:0052405 P negative regulation by host of symbiont catalytic activity
GO:0070062 C extracellular exosome
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