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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2131 O_BomaMSG11919_complete:A_BomaMSG_c22274_g1_i1
291bp
general_transcription_factor_IIH_subunit_3_[Bombyx_mori]
GO:0000439 C transcription factor TFIIH core complex
GO:0003684 F damaged DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006412 P translation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008135 F translation factor activity, RNA binding
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0046872 F metal ion binding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
2132 O_BomaMSG1191_internal:A_BomaMSG_c4977_g1_i1
186bp
thyroglobulin-like_[Bombyx_mori]
2133 O_BomaMSG11920_complete:A_BomaMSG_c22277_g1_i1
222bp
coenzyme_Q-binding_protein_COQ10_homolog_A,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
2134 O_BomaMSG11921_3prime_partial:A_BomaMSG_c22277_g1_i4
106bp
coenzyme_Q-binding_protein_COQ10_homolog_A,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
2135 O_BomaMSG11922_3prime_partial:A_BomaMSG_c22278_g1_i1
970bp
eukaryotic_translation_initiation_factor_3_subunit_A_[Bombyx_mori]
GO:0001731 P formation of translation preinitiation complex
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0033290 C eukaryotic 48S preinitiation complex
2136 O_BomaMSG11923_5prime_partial:A_BomaMSG_c22278_g1_i1
176bp
2137 O_BomaMSG11924_complete:A_BomaMSG_c22279_g1_i2
133bp
transmembrane_protein_234_homolog_isoform_X3_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2138 O_BomaMSG11925_complete:A_BomaMSG_c22279_g1_i3
116bp
transmembrane_protein_234_homolog_isoform_X3_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2139 O_BomaMSG11926_5prime_partial:A_BomaMSG_c22281_g1_i1
630bp
LOW_QUALITY_PROTEIN:_ATP-dependent_RNA_helicase_DHX8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
2140 O_BomaMSG11927_5prime_partial:A_BomaMSG_c22281_g1_i1
194bp
hypothetical_protein_D910_00434,_partial_[Dendroctonus_ponderosae]
2141 O_BomaMSG11928_internal:A_BomaMSG_c22281_g2_i1
112bp
LOW_QUALITY_PROTEIN:_ATP-dependent_RNA_helicase_DHX8_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
2142 O_BomaMSG11929_complete:A_BomaMSG_c22282_g1_i1
146bp
trafficking_protein_particle_complex_1_isoform_X1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0030008 C TRAPP complex
GO:0043547 P positive regulation of GTPase activity
2143 O_BomaMSG1192_internal:A_BomaMSG_c4983_g1_i1
126bp
uncharacterized_protein_LOC101744153_[Bombyx_mori]
2144 O_BomaMSG11930_complete:A_BomaMSG_c22282_g1_i2
109bp
trafficking_protein_particle_complex_1_isoform_X1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0030008 C TRAPP complex
GO:0043547 P positive regulation of GTPase activity
2145 O_BomaMSG11931_5prime_partial:A_BomaMSG_c22284_g1_i1
237bp
hypothetical_protein_1_-_silkworm_transposon_mag
2146 O_BomaMSG11932_complete:A_BomaMSG_c22284_g1_i1
134bp
hypothetical_protein_1_-_silkworm_transposon_mag
2147 O_BomaMSG11933_internal:A_BomaMSG_c22284_g2_i1
102bp
hypothetical_protein_2_-_silkworm_transposon_mag
2148 O_BomaMSG11934_3prime_partial:A_BomaMSG_c22285_g1_i1
457bp
kelch-like_ECH-associated_protein_1_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0001887 P selenium compound metabolic process
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005884 C actin filament
GO:0005913 C adherens junction
GO:0005925 C focal adhesion
GO:0006108 P malate metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0009812 P flavonoid metabolic process
GO:0010038 P response to metal ion
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010629 P negative regulation of gene expression
GO:0016567 P protein ubiquitination
GO:0019694 P alkanesulfonate metabolic process
GO:0030496 C midbody
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0035902 P response to immobilization stress
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042994 P cytoplasmic sequestering of transcription factor
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0045604 P regulation of epidermal cell differentiation
GO:0051259 P protein complex oligomerization
GO:0071353 P cellular response to interleukin-4
GO:0071407 P cellular response to organic cyclic compound
GO:0097066 P response to thyroid hormone
2149 O_BomaMSG11935_complete:A_BomaMSG_c22285_g1_i1
122bp
2150 O_BomaMSG11936_internal:A_BomaMSG_c22285_g1_i2
317bp
kelch-like_ECH-associated_protein_1_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0001887 P selenium compound metabolic process
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005884 C actin filament
GO:0005913 C adherens junction
GO:0005925 C focal adhesion
GO:0006108 P malate metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0009812 P flavonoid metabolic process
GO:0010038 P response to metal ion
GO:0010499 P proteasomal ubiquitin-independent protein catabolic process
GO:0010629 P negative regulation of gene expression
GO:0016567 P protein ubiquitination
GO:0019694 P alkanesulfonate metabolic process
GO:0030496 C midbody
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0035902 P response to immobilization stress
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042994 P cytoplasmic sequestering of transcription factor
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0045604 P regulation of epidermal cell differentiation
GO:0051259 P protein complex oligomerization
GO:0071353 P cellular response to interleukin-4
GO:0071407 P cellular response to organic cyclic compound
GO:0097066 P response to thyroid hormone
2151 O_BomaMSG11937_complete:A_BomaMSG_c22285_g1_i2
122bp
2152 O_BomaMSG11938_complete:A_BomaMSG_c22288_g1_i1
117bp
2153 O_BomaMSG11939_3prime_partial:A_BomaMSG_c22291_g1_i1
325bp
putative_RNA_exonuclease_NEF-sp_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005730 C nucleolus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0070062 C extracellular exosome
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2154 O_BomaMSG1193_internal:A_BomaMSG_c4985_g1_i1
143bp
LOW_QUALITY_PROTEIN:_probable_C-mannosyltransferase_DPY19L1_[Bombyx_mori]
GO:0000030 F mannosyltransferase activity
GO:0003824 F catalytic activity
GO:0005637 C nuclear inner membrane
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005975 P carbohydrate metabolic process
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0018406 P protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan
GO:0030154 P cell differentiation
GO:0048471 C perinuclear region of cytoplasm
2155 O_BomaMSG11940_3prime_partial:A_BomaMSG_c22291_g1_i2
325bp
putative_RNA_exonuclease_NEF-sp_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005730 C nucleolus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0070062 C extracellular exosome
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2156 O_BomaMSG11941_3prime_partial:A_BomaMSG_c22292_g1_i1
732bp
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2157 O_BomaMSG11942_internal:A_BomaMSG_c22294_g1_i1
442bp
uncharacterized_protein_LOC110385352_isoform_X3_[Bombyx_mori]
2158 O_BomaMSG11943_internal:A_BomaMSG_c22294_g1_i2
235bp
uncharacterized_protein_LOC110385352_isoform_X3_[Bombyx_mori]
2159 O_BomaMSG11944_internal:A_BomaMSG_c22294_g1_i3
449bp
uncharacterized_protein_LOC110385352_isoform_X3_[Bombyx_mori]
2160 O_BomaMSG11945_5prime_partial:A_BomaMSG_c22296_g1_i1
378bp
uncharacterized_protein_LOC110379814_[Helicoverpa_armigera]
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