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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1651 O_BomaMSG11487_internal:A_BomaMSG_c22036_g1_i1
370bp
probable_ATP-dependent_RNA_helicase_DHX34_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
1652 O_BomaMSG11488_complete:A_BomaMSG_c22036_g1_i1
174bp
1653 O_BomaMSG11489_internal:A_BomaMSG_c22037_g1_i1
528bp
talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
1654 O_BomaMSG1148_internal:A_BomaMSG_c4826_g1_i1
229bp
pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
1655 O_BomaMSG11490_complete:A_BomaMSG_c22037_g1_i1
131bp
1656 O_BomaMSG11491_complete:A_BomaMSG_c22038_g1_i1
226bp
solute_carrier_family_41_member_1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0008324 F cation transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0098655 P cation transmembrane transport
1657 O_BomaMSG11492_complete:A_BomaMSG_c22038_g1_i1
125bp
1658 O_BomaMSG11493_complete:A_BomaMSG_c22038_g1_i2
495bp
solute_carrier_family_41_member_1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0008324 F cation transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070838 P metal ion transport
GO:0072509 F inorganic cation transmembrane transporter activity
GO:0098655 P cation transmembrane transport
1659 O_BomaMSG11494_complete:A_BomaMSG_c22038_g1_i2
125bp
1660 O_BomaMSG11495_5prime_partial:A_BomaMSG_c22039_g1_i1
139bp
activator_of_90_kDa_heat_shock_protein_ATPase_homolog_1_[Bombyx_mori]
GO:0001671 F ATPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006950 P response to stress
GO:0032781 P positive regulation of ATP-dependent activity
GO:0051087 F chaperone binding
GO:0070062 C extracellular exosome
1661 O_BomaMSG11496_internal:A_BomaMSG_c22040_g1_i1
246bp
gag-pol_polyprotein_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1662 O_BomaMSG11497_3prime_partial:A_BomaMSG_c22041_g1_i1
376bp
LOW_QUALITY_PROTEIN:_5'-AMP-activated_protein_kinase_subunit_gamma_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004679 F AMP-activated protein kinase activity
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0016208 F AMP binding
GO:0031588 C nucleotide-activated protein kinase complex
GO:0043531 F ADP binding
1663 O_BomaMSG11498_complete:A_BomaMSG_c22043_g1_i1
343bp
nucleoporin-like_protein_amo1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031965 C nuclear membrane
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
1664 O_BomaMSG11499_complete:A_BomaMSG_c22044_g1_i1
111bp
1665 O_BomaMSG1149_5prime_partial:A_BomaMSG_c4826_g1_i1
204bp
1666 O_BomaMSG114_internal:A_BomaMSG_c566_g1_i1
149bp
SID-1-like_protein,_partial_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033227 P dsRNA transport
GO:0051033 F RNA transmembrane transporter activity
1667 O_BomaMSG11500_complete:A_BomaMSG_c22044_g1_i3
111bp
1668 O_BomaMSG11501_complete:A_BomaMSG_c22044_g1_i4
532bp
cytochrome_P450_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
1669 O_BomaMSG11502_3prime_partial:A_BomaMSG_c22044_g1_i5
241bp
15-hydroxyprostaglandin_dehydrogenase_[NAD(+)]_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004957 F prostaglandin E receptor activity
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006693 P prostaglandin metabolic process
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007565 P female pregnancy
GO:0007567 P parturition
GO:0008152 P metabolic process
GO:0016404 F 15-hydroxyprostaglandin dehydrogenase (NAD+) activity
GO:0016491 F oxidoreductase activity
GO:0030728 P ovulation
GO:0045786 P negative regulation of cell cycle
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
GO:0070493 P thrombin-activated receptor signaling pathway
GO:0097070 P ductus arteriosus closure
1670 O_BomaMSG11503_3prime_partial:A_BomaMSG_c22044_g1_i6
241bp
15-hydroxyprostaglandin_dehydrogenase_[NAD(+)]_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004957 F prostaglandin E receptor activity
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006693 P prostaglandin metabolic process
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007565 P female pregnancy
GO:0007567 P parturition
GO:0008152 P metabolic process
GO:0016404 F 15-hydroxyprostaglandin dehydrogenase (NAD+) activity
GO:0016491 F oxidoreductase activity
GO:0030728 P ovulation
GO:0045786 P negative regulation of cell cycle
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
GO:0070493 P thrombin-activated receptor signaling pathway
GO:0097070 P ductus arteriosus closure
1671 O_BomaMSG11504_complete:A_BomaMSG_c22045_g1_i1
712bp
ABC_transporter_G_family_member_23_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043190 C ATP-binding cassette (ABC) transporter complex
GO:0044351 P macropinocytosis
GO:0055085 P transmembrane transport
1672 O_BomaMSG11505_complete:A_BomaMSG_c22045_g1_i1
143bp
1673 O_BomaMSG11506_3prime_partial:A_BomaMSG_c22046_g1_i1
330bp
rab11_family-interacting_protein_1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
GO:0045055 P regulated exocytosis
GO:0055037 C recycling endosome
GO:0070164 P negative regulation of adiponectin secretion
1674 O_BomaMSG11507_complete:A_BomaMSG_c22046_g1_i1
143bp
1675 O_BomaMSG11508_5prime_partial:A_BomaMSG_c22047_g1_i1
109bp
1676 O_BomaMSG11509_internal:A_BomaMSG_c22047_g1_i2
358bp
uncharacterized_protein_LOC101740250_isoform_X3_[Bombyx_mori]
1677 O_BomaMSG1150_5prime_partial:A_BomaMSG_c4826_g1_i1
113bp
1678 O_BomaMSG11510_5prime_partial:A_BomaMSG_c22047_g1_i2
145bp
1679 O_BomaMSG11511_complete:A_BomaMSG_c22047_g1_i2
129bp
1680 O_BomaMSG11512_internal:A_BomaMSG_c22047_g1_i3
331bp
uncharacterized_protein_LOC101740250_isoform_X2_[Bombyx_mori]
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