Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1561	O_BomaMSG11405_complete:A_BomaMSG_c21989_g1_i2 323bp		transcription_initiation_factor_IIA_subunit_1_[Bombyx_mori]	GO:0001094 F TFIID-class transcription factor complex binding GO:0001128 F obsolete RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly GO:0005634 C nucleus GO:0005672 C transcription factor TFIIA complex GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0006367 P transcription initiation from RNA polymerase II promoter GO:0017025 F TBP-class protein binding GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0051123 P RNA polymerase II preinitiation complex assembly
1562	O_BomaMSG11406_complete:A_BomaMSG_c21989_g1_i2 121bp
1563	O_BomaMSG11407_complete:A_BomaMSG_c21989_g1_i2 114bp
1564	O_BomaMSG11408_complete:A_BomaMSG_c21990_g1_i1 135bp		Uncharacterized_protein_OBRU01_12463_[Operophtera_brumata]	GO:0005509 F calcium ion binding GO:0007160 P cell-matrix adhesion GO:0016020 C membrane GO:0016021 C integral component of membrane
1565	O_BomaMSG11409_complete:A_BomaMSG_c21990_g1_i2 103bp		Uncharacterized_protein_OBRU01_12463_[Operophtera_brumata]	GO:0005509 F calcium ion binding GO:0007160 P cell-matrix adhesion GO:0016020 C membrane GO:0016021 C integral component of membrane
1566	O_BomaMSG1140_internal:A_BomaMSG_c4811_g1_i1 112bp		bromodomain_and_WD_repeat-containing_protein_1_[Bombyx_mori]
1567	O_BomaMSG11410_3prime_partial:A_BomaMSG_c21991_g1_i1 320bp		LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007165 P signal transduction GO:0007275 P multicellular organism development GO:0043565 F sequence-specific DNA binding GO:0044212 F transcription cis-regulatory region binding GO:0046872 F metal ion binding
1568	O_BomaMSG11411_3prime_partial:A_BomaMSG_c21991_g1_i2 329bp		LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737452_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007165 P signal transduction GO:0007275 P multicellular organism development GO:0043565 F sequence-specific DNA binding GO:0044212 F transcription cis-regulatory region binding GO:0046872 F metal ion binding
1569	O_BomaMSG11412_internal:A_BomaMSG_c21992_g1_i1 115bp		PREDICTED:_uncharacterized_protein_LOC106125112_[Papilio_xuthus]
1570	O_BomaMSG11413_5prime_partial:A_BomaMSG_c21992_g1_i1 109bp
1571	O_BomaMSG11414_3prime_partial:A_BomaMSG_c21992_g1_i2 586bp		PREDICTED:_uncharacterized_protein_LOC106708887_[Papilio_machaon]
1572	O_BomaMSG11415_5prime_partial:A_BomaMSG_c21992_g1_i2 110bp
1573	O_BomaMSG11416_5prime_partial:A_BomaMSG_c21992_g1_i2 109bp
1574	O_BomaMSG11417_complete:A_BomaMSG_c21993_g1_i2 265bp		Chain_A,_Structural_Characterization_Of_Bombyx_Mori_Glutathione_Transferase_Bmgstd1	GO:0004364 F glutathione transferase activity GO:0004602 F glutathione peroxidase activity GO:0005576 C extracellular region GO:0005737 C cytoplasm GO:0006749 P glutathione metabolic process GO:0016740 F transferase activity GO:0098869 P cellular oxidant detoxification
1575	O_BomaMSG11418_complete:A_BomaMSG_c21993_g1_i3 240bp		glutathione_S-transferase_delta_1_[Bombyx_mori]	GO:0004364 F glutathione transferase activity GO:0004602 F glutathione peroxidase activity GO:0005576 C extracellular region GO:0005737 C cytoplasm GO:0006749 P glutathione metabolic process GO:0016740 F transferase activity GO:0098869 P cellular oxidant detoxification
1576	O_BomaMSG11419_5prime_partial:A_BomaMSG_c21994_g1_i1 199bp		serine/threonine_protein_phosphatase_6_[Bombyx_mori]	GO:0004721 F phosphoprotein phosphatase activity GO:0004722 F protein serine/threonine phosphatase activity GO:0005575 C cellular_component GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006470 P protein dephosphorylation GO:0007049 P cell cycle GO:0016787 F hydrolase activity GO:0046872 F metal ion binding
1577	O_BomaMSG1141_internal:A_BomaMSG_c4815_g1_i1 163bp		calpain-B_isoform_X6_[Bombyx_mori]	GO:0004198 F calcium-dependent cysteine-type endopeptidase activity GO:0005509 F calcium ion binding GO:0005622 C intracellular anatomical structure GO:0005737 C cytoplasm GO:0006508 P proteolysis GO:0006909 P phagocytosis GO:0008233 F peptidase activity GO:0008234 F cysteine-type peptidase activity GO:0008340 P determination of adult lifespan GO:0009953 P dorsal/ventral pattern formation GO:0015629 C actin cytoskeleton GO:0016540 P protein autoprocessing GO:0016787 F hydrolase activity GO:0021919 P BMP signaling pathway involved in spinal cord dorsal/ventral patterning GO:0030036 P actin cytoskeleton organization GO:0042335 P cuticle development GO:0043025 C neuronal cell body GO:0046872 F metal ion binding GO:0050832 P defense response to fungus
1578	O_BomaMSG11420_3prime_partial:A_BomaMSG_c21995_g1_i1 236bp		ubiquinol-cytochrome-c_reductase_complex_assembly_factor_1_[Bombyx_mori]	GO:0005739 C mitochondrion GO:0005743 C mitochondrial inner membrane GO:0016020 C membrane GO:0034551 P mitochondrial respiratory chain complex III assembly GO:0070131 P positive regulation of mitochondrial translation
1579	O_BomaMSG11421_complete:A_BomaMSG_c21996_g1_i1 387bp		vacuolar_ATPase_subunit_C_[Bombyx_mori]	GO:0006810 P transport GO:0006811 P ion transport GO:0015078 F proton transmembrane transporter activity GO:0015991 P proton transmembrane transport GO:0015992 P proton transmembrane transport GO:0033180 C proton-transporting V-type ATPase, V1 domain
1580	O_BomaMSG11422_5prime_partial:A_BomaMSG_c21997_g1_i1 159bp		kielin/chordin-like_protein_isoform_X1_[Bombyx_mori]
1581	O_BomaMSG11423_5prime_partial:A_BomaMSG_c21997_g1_i2 327bp		balbiani_ring_protein_3_isoform_X2_[Bombyx_mori]	GO:0005886 C plasma membrane GO:0005887 C integral component of plasma membrane GO:0005923 C bicellular tight junction GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016328 C lateral plasma membrane GO:0098609 P cell-cell adhesion GO:0098641 F cadherin binding involved in cell-cell adhesion
1582	O_BomaMSG11424_5prime_partial:A_BomaMSG_c21997_g1_i3 736bp		balbiani_ring_protein_3_isoform_X2_[Bombyx_mori]	GO:0005102 F signaling receptor binding GO:0005179 F hormone activity GO:0005576 C extracellular region GO:0005615 C extracellular space GO:0005783 C endoplasmic reticulum GO:0005794 C Golgi apparatus GO:0006590 P thyroid hormone generation GO:0009268 P response to pH GO:0015705 P iodide transport GO:0030878 P thyroid gland development GO:0031641 P regulation of myelination GO:0032403 F protein-containing complex binding GO:0032496 P response to lipopolysaccharide GO:0042403 P thyroid hormone metabolic process GO:0042446 P hormone biosynthetic process GO:0042803 F protein homodimerization activity GO:0043168 F anion binding GO:0043234 C protein-containing complex GO:0045056 P transcytosis GO:0048471 C perinuclear region of cytoplasm GO:0051087 F chaperone binding GO:0052689 F carboxylic ester hydrolase activity
1583	O_BomaMSG11425_complete:A_BomaMSG_c21997_g1_i3 134bp
1584	O_BomaMSG11426_complete:A_BomaMSG_c21997_g1_i3 118bp
1585	O_BomaMSG11427_3prime_partial:A_BomaMSG_c21997_g1_i3 105bp
1586	O_BomaMSG11428_complete:A_BomaMSG_c22000_g1_i1 346bp		flavone_synthase_I_[Bombyx_mori]	GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0008150 P biological_process GO:0016491 F oxidoreductase activity GO:0051213 F dioxygenase activity GO:0055114 P obsolete oxidation-reduction process
1587	O_BomaMSG11429_internal:A_BomaMSG_c22001_g1_i1 340bp		breast_cancer_type_1_susceptibility_protein_homolog_[Bombyx_mori]
1588	O_BomaMSG1142_internal:A_BomaMSG_c4816_g1_i1 151bp
1589	O_BomaMSG11430_3prime_partial:A_BomaMSG_c22002_g1_i1 226bp		p21-activated_protein_kinase-interacting_protein_1-like_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005634 C nucleus GO:0005730 C nucleolus GO:0009968 P negative regulation of signal transduction
1590	O_BomaMSG11431_5prime_partial:A_BomaMSG_c22002_g1_i1 106bp