Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1501	O_BomaMSG11351_5prime_partial:A_BomaMSG_c21955_g1_i3 222bp
1502	O_BomaMSG11352_complete:A_BomaMSG_c21955_g1_i3 125bp
1503	O_BomaMSG11353_5prime_partial:A_BomaMSG_c21955_g1_i3 120bp
1504	O_BomaMSG11354_3prime_partial:A_BomaMSG_c21955_g1_i4 525bp		protein_draper_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005886 C plasma membrane GO:0010842 P retina layer formation GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016323 C basolateral plasma membrane GO:0034109 P homotypic cell-cell adhesion
1505	O_BomaMSG11355_5prime_partial:A_BomaMSG_c21955_g1_i4 222bp
1506	O_BomaMSG11356_complete:A_BomaMSG_c21955_g1_i4 125bp
1507	O_BomaMSG11357_5prime_partial:A_BomaMSG_c21955_g1_i4 120bp
1508	O_BomaMSG11358_complete:A_BomaMSG_c21957_g1_i1 422bp		succinate--CoA_ligase_[GDP-forming]_subunit_beta,_mitochondrial_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003824 F catalytic activity GO:0004776 F succinate-CoA ligase (GDP-forming) activity GO:0005524 F ATP binding GO:0005525 F GTP binding GO:0005634 C nucleus GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0005815 C microtubule organizing center GO:0005886 C plasma membrane GO:0006099 P tricarboxylic acid cycle GO:0006104 P succinyl-CoA metabolic process GO:0008152 P metabolic process GO:0016874 F ligase activity
1509	O_BomaMSG11359_complete:A_BomaMSG_c21957_g1_i1 216bp		hypothetical_protein_AWRI1631_74630_[Saccharomyces_cerevisiae_AWRI1631]
1510	O_BomaMSG1135_internal:A_BomaMSG_c4796_g1_i1 119bp		zinc_finger_protein_2_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0046872 F metal ion binding
1511	O_BomaMSG11360_5prime_partial:A_BomaMSG_c21958_g1_i1 428bp		WD_repeat-containing_protein_36_isoform_X2_[Bombyx_mori]	GO:0001895 P retina homeostasis GO:0005575 C cellular_component GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0006364 P rRNA processing GO:0007601 P visual perception GO:0008150 P biological_process GO:0030516 P regulation of axon extension GO:0032040 C small-subunit processome GO:0042254 P ribosome biogenesis GO:0044822 F RNA binding GO:0050896 P response to stimulus
1512	O_BomaMSG11361_3prime_partial:A_BomaMSG_c21958_g1_i1 149bp
1513	O_BomaMSG11362_complete:A_BomaMSG_c21958_g1_i1 110bp
1514	O_BomaMSG11363_internal:A_BomaMSG_c21959_g1_i1 244bp		probable_RNA-binding_protein_19_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005694 C chromosome GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0007275 P multicellular organism development GO:0016020 C membrane GO:0040019 P positive regulation of embryonic development GO:0044822 F RNA binding
1515	O_BomaMSG11364_3prime_partial:A_BomaMSG_c21959_g2_i1 252bp		probable_RNA-binding_protein_19_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005694 C chromosome GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0007275 P multicellular organism development GO:0016020 C membrane GO:0040019 P positive regulation of embryonic development GO:0044822 F RNA binding
1516	O_BomaMSG11365_complete:A_BomaMSG_c21959_g2_i1 108bp
1517	O_BomaMSG11366_complete:A_BomaMSG_c21960_g1_i1 192bp		dual_specificity_protein_phosphatase_13_isoform_X4_[Bombyx_mori]	GO:0004721 F phosphoprotein phosphatase activity GO:0004725 F protein tyrosine phosphatase activity GO:0005737 C cytoplasm GO:0006470 P protein dephosphorylation GO:0008138 F protein tyrosine/serine/threonine phosphatase activity GO:0016311 P dephosphorylation GO:0016787 F hydrolase activity GO:0016791 F phosphatase activity GO:0035335 P peptidyl-tyrosine dephosphorylation
1518	O_BomaMSG11367_complete:A_BomaMSG_c21960_g1_i3 131bp		dual_specificity_protein_phosphatase_13_isoform_X4_[Bombyx_mori]	GO:0004721 F phosphoprotein phosphatase activity GO:0004725 F protein tyrosine phosphatase activity GO:0005737 C cytoplasm GO:0006470 P protein dephosphorylation GO:0008138 F protein tyrosine/serine/threonine phosphatase activity GO:0016311 P dephosphorylation GO:0016787 F hydrolase activity GO:0016791 F phosphatase activity GO:0035335 P peptidyl-tyrosine dephosphorylation
1519	O_BomaMSG11368_5prime_partial:A_BomaMSG_c21960_g1_i4 222bp		dual_specificity_protein_phosphatase_3_isoform_X1_[Bombyx_mori]	GO:0004721 F phosphoprotein phosphatase activity GO:0004725 F protein tyrosine phosphatase activity GO:0005737 C cytoplasm GO:0006470 P protein dephosphorylation GO:0008138 F protein tyrosine/serine/threonine phosphatase activity GO:0016311 P dephosphorylation GO:0016787 F hydrolase activity GO:0016791 F phosphatase activity GO:0035335 P peptidyl-tyrosine dephosphorylation
1520	O_BomaMSG11369_internal:A_BomaMSG_c21963_g1_i1 161bp		uncharacterized_protein_LOC101742167_[Bombyx_mori]	GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated
1521	O_BomaMSG1136_internal:A_BomaMSG_c4796_g1_i1 119bp
1522	O_BomaMSG11370_3prime_partial:A_BomaMSG_c21964_g1_i1 254bp		conserved_oligomeric_Golgi_complex_subunit_6_[Bombyx_mori]	GO:0000139 C Golgi membrane GO:0005794 C Golgi apparatus GO:0006810 P transport GO:0006891 P intra-Golgi vesicle-mediated transport GO:0015031 P protein transport GO:0016020 C membrane GO:0017119 C Golgi transport complex GO:0019233 P sensory perception of pain
1523	O_BomaMSG11371_3prime_partial:A_BomaMSG_c21965_g1_i1 226bp		myocyte_enhancing_factor_2_isoform_A_[Bombyx_mori]	GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001158 F cis-regulatory region sequence-specific DNA binding GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007275 P multicellular organism development GO:0007496 P anterior midgut development GO:0007498 P mesoderm development GO:0007507 P heart development GO:0007517 P muscle organ development GO:0007519 P skeletal muscle tissue development GO:0007520 P myoblast fusion GO:0010468 P regulation of gene expression GO:0016202 P regulation of striated muscle tissue development GO:0019730 P antimicrobial humoral response GO:0019915 P lipid storage GO:0030154 P cell differentiation GO:0030707 P ovarian follicle cell development GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter GO:0045475 P locomotor rhythm GO:0046983 F protein dimerization activity GO:0048747 P muscle cell development GO:0052576 P carbohydrate storage
1524	O_BomaMSG11372_complete:A_BomaMSG_c21965_g1_i1 134bp		_hypothetical_protein_BOS_2848_[Bos_taurus]
1525	O_BomaMSG11373_3prime_partial:A_BomaMSG_c21965_g1_i2 222bp		myocyte_enhancing_factor_2_isoform_B_[Bombyx_mori]	GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001158 F cis-regulatory region sequence-specific DNA binding GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007275 P multicellular organism development GO:0007496 P anterior midgut development GO:0007498 P mesoderm development GO:0007507 P heart development GO:0007517 P muscle organ development GO:0007519 P skeletal muscle tissue development GO:0007520 P myoblast fusion GO:0010468 P regulation of gene expression GO:0016202 P regulation of striated muscle tissue development GO:0019730 P antimicrobial humoral response GO:0019915 P lipid storage GO:0030154 P cell differentiation GO:0030707 P ovarian follicle cell development GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter GO:0045475 P locomotor rhythm GO:0046983 F protein dimerization activity GO:0048747 P muscle cell development GO:0052576 P carbohydrate storage
1526	O_BomaMSG11374_complete:A_BomaMSG_c21965_g1_i2 134bp		_hypothetical_protein_BOS_2848_[Bos_taurus]
1527	O_BomaMSG11375_complete:A_BomaMSG_c21967_g1_i1 410bp		aspartate_aminotransferase,_cytoplasmic_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0004069 F L-aspartate:2-oxoglutarate aminotransferase activity GO:0005737 C cytoplasm GO:0005739 C mitochondrion GO:0005829 C cytosol GO:0006094 P gluconeogenesis GO:0006103 P 2-oxoglutarate metabolic process GO:0006114 P glycerol biosynthetic process GO:0006520 P cellular amino acid metabolic process GO:0006531 P aspartate metabolic process GO:0006532 P aspartate biosynthetic process GO:0006536 P glutamate metabolic process GO:0008483 F transaminase activity GO:0008652 P cellular amino acid biosynthetic process GO:0009058 P biosynthetic process GO:0016740 F transferase activity GO:0030170 F pyridoxal phosphate binding GO:0042802 F identical protein binding GO:0047801 F L-cysteine transaminase activity GO:0080130 F L-phenylalanine:2-oxoglutarate aminotransferase activity
1528	O_BomaMSG11376_complete:A_BomaMSG_c21967_g1_i1 117bp
1529	O_BomaMSG11377_internal:A_BomaMSG_c21968_g2_i1 185bp		Uncharacterized_protein_OBRU01_09374_[Operophtera_brumata]
1530	O_BomaMSG11378_5prime_partial:A_BomaMSG_c21969_g1_i1 456bp		probable_methylmalonate-semialdehyde_dehydrogenase_[acylating],_mitochondrial_isoform_X1_[Bombyx_mori]	GO:0004491 F methylmalonate-semialdehyde dehydrogenase (acylating) activity GO:0005739 C mitochondrion GO:0006573 P valine metabolic process GO:0008152 P metabolic process GO:0016491 F oxidoreductase activity GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0018478 F malonate-semialdehyde dehydrogenase (acetylating) activity GO:0019859 P thymine metabolic process GO:0055114 P obsolete oxidation-reduction process