Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1141	O_BomaMSG11027_internal:A_BomaMSG_c21797_g1_i2 393bp		probable_ATP-dependent_RNA_helicase_DDX52_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0004004 F RNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005730 C nucleolus GO:0006364 P rRNA processing GO:0010501 P RNA secondary structure unwinding GO:0016020 C membrane GO:0016787 F hydrolase activity GO:0044822 F RNA binding
1142	O_BomaMSG11028_complete:A_BomaMSG_c21797_g1_i2 141bp
1143	O_BomaMSG11029_complete:A_BomaMSG_c21798_g1_i1 125bp		28S_ribosomal_protein_S22,_mitochondrial_[Bombyx_mori]
1144	O_BomaMSG1102_internal:A_BomaMSG_c4712_g1_i1 190bp		cullin-5_[Bombyx_mori]	GO:0000209 P protein polyubiquitination GO:0004842 F ubiquitin-protein transferase activity GO:0005000 F vasopressin receptor activity GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0005886 C plasma membrane GO:0006511 P ubiquitin-dependent protein catabolic process GO:0006970 P response to osmotic stress GO:0007186 P G protein-coupled receptor signaling pathway GO:0016567 P protein ubiquitination GO:0031461 C cullin-RING ubiquitin ligase complex GO:0031466 C Cul5-RING ubiquitin ligase complex GO:0031625 F ubiquitin protein ligase binding GO:0042787 P ubiquitin-dependent protein catabolic process GO:0051480 P regulation of cytosolic calcium ion concentration GO:0061630 F ubiquitin protein ligase activity
1145	O_BomaMSG11030_5prime_partial:A_BomaMSG_c21798_g1_i2 319bp		28S_ribosomal_protein_S22,_mitochondrial_[Bombyx_mori]	GO:0003735 F structural constituent of ribosome GO:0005739 C mitochondrion GO:0005763 C mitochondrial small ribosomal subunit GO:0005840 C ribosome GO:0008150 P biological_process GO:0030529 C ribonucleoprotein complex
1146	O_BomaMSG11031_5prime_partial:A_BomaMSG_c21799_g1_i1 149bp		uncharacterized_protein_LOC101745027_isoform_X1_[Bombyx_mori]
1147	O_BomaMSG11032_complete:A_BomaMSG_c21799_g1_i2 136bp		uncharacterized_protein_LOC101745027_isoform_X2_[Bombyx_mori]
1148	O_BomaMSG11033_5prime_partial:A_BomaMSG_c21800_g1_i1 116bp		gag-pol_polyprotein_[Lasius_niger]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0004190 F aspartic-type endopeptidase activity GO:0005524 F ATP binding GO:0006508 P proteolysis GO:0008233 F peptidase activity GO:0008270 F zinc ion binding GO:0015074 P DNA integration GO:0016787 F hydrolase activity GO:0046872 F metal ion binding
1149	O_BomaMSG11034_3prime_partial:A_BomaMSG_c21801_g1_i1 215bp		protein_SSXT_[Bombyx_mori]	GO:0000226 P microtubule cytoskeleton organization GO:0000902 P cell morphogenesis GO:0005634 C nucleus GO:0005881 C cytoplasmic microtubule GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0007010 P cytoskeleton organization GO:0030374 F nuclear receptor coactivator activity GO:0035556 P intracellular signal transduction GO:0042493 P response to xenobiotic stimulus GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0048013 P ephrin receptor signaling pathway GO:0071564 C npBAF complex GO:0097150 P neuronal stem cell population maintenance
1150	O_BomaMSG11035_3prime_partial:A_BomaMSG_c21801_g1_i1 121bp
1151	O_BomaMSG11036_internal:A_BomaMSG_c21801_g2_i1 171bp		protein_SSXT_[Bombyx_mori]
1152	O_BomaMSG11037_internal:A_BomaMSG_c21801_g2_i1 170bp
1153	O_BomaMSG11038_internal:A_BomaMSG_c21802_g1_i1 156bp		splicing_factor_3B_subunit_1_[Bombyx_mori]	GO:0000245 P spliceosomal complex assembly GO:0000398 P mRNA splicing, via spliceosome GO:0000785 C chromatin GO:0001825 P blastocyst formation GO:0003682 F chromatin binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005681 C spliceosomal complex GO:0005686 C U2 snRNP GO:0005689 C U12-type spliceosomal complex GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0009952 P anterior/posterior pattern specification GO:0016363 C nuclear matrix GO:0030532 C small nuclear ribonucleoprotein complex GO:0034693 C U11/U12 snRNP GO:0044822 F RNA binding GO:0071004 C U2-type prespliceosome GO:0071013 C catalytic step 2 spliceosome
1154	O_BomaMSG11039_5prime_partial:A_BomaMSG_c21802_g1_i1 122bp
1155	O_BomaMSG1103_complete:A_BomaMSG_c4717_g1_i1 196bp		thiol_peroxiredoxin_[Bombyx_mori]	GO:0004601 F peroxidase activity GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0005875 C microtubule associated complex GO:0006974 P cellular response to DNA damage stimulus GO:0006979 P response to oxidative stress GO:0007155 P cell adhesion GO:0007281 P germ cell development GO:0008340 P determination of adult lifespan GO:0008354 P germ cell migration GO:0008379 F thioredoxin peroxidase activity GO:0010906 P regulation of glucose metabolic process GO:0016209 F antioxidant activity GO:0016491 F oxidoreductase activity GO:0042594 P response to starvation GO:0042744 P hydrogen peroxide catabolic process GO:0045454 P cell redox homeostasis GO:0051920 F peroxiredoxin activity GO:0055114 P obsolete oxidation-reduction process GO:0098869 P cellular oxidant detoxification
1156	O_BomaMSG11040_3prime_partial:A_BomaMSG_c21802_g1_i1 100bp
1157	O_BomaMSG11041_3prime_partial:A_BomaMSG_c21802_g1_i2 419bp		splicing_factor_3B_subunit_1_[Bombyx_mori]	GO:0005634 C nucleus GO:0005681 C spliceosomal complex GO:0006397 P mRNA processing GO:0008380 P RNA splicing
1158	O_BomaMSG11042_complete:A_BomaMSG_c21802_g1_i2 156bp
1159	O_BomaMSG11043_complete:A_BomaMSG_c21802_g1_i2 112bp
1160	O_BomaMSG11044_internal:A_BomaMSG_c21803_g1_i1 166bp		protein_FAM50_homolog_[Bombyx_mori]	GO:0005634 C nucleus
1161	O_BomaMSG11045_3prime_partial:A_BomaMSG_c21803_g2_i1 206bp		protein_FAM50_homolog_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0022008 P neurogenesis GO:0044822 F RNA binding
1162	O_BomaMSG11046_internal:A_BomaMSG_c21803_g1_i2 133bp		protein_FAM50_homolog_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0022008 P neurogenesis GO:0044822 F RNA binding
1163	O_BomaMSG11047_complete:A_BomaMSG_c21804_g1_i1 342bp		secretory_carrier-associated_membrane_protein_5_[Bombyx_mori]	GO:0005515 F protein binding GO:0005654 C nucleoplasm GO:0005768 C endosome GO:0005794 C Golgi apparatus GO:0005802 C trans-Golgi network GO:0006810 P transport GO:0006887 P exocytosis GO:0008021 C synaptic vesicle GO:0015031 P protein transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0030054 C cell junction GO:0030672 C synaptic vesicle membrane GO:0042589 C zymogen granule membrane GO:0043231 C intracellular membrane-bounded organelle GO:0045202 C synapse GO:0055038 C recycling endosome membrane
1164	O_BomaMSG11048_complete:A_BomaMSG_c21806_g1_i2 106bp
1165	O_BomaMSG11049_complete:A_BomaMSG_c21806_g1_i5 106bp
1166	O_BomaMSG1104_5prime_partial:A_BomaMSG_c4717_g1_i2 221bp		thiol_peroxiredoxin_isoform_X1_[Bombyx_mori]	GO:0004601 F peroxidase activity GO:0005515 F protein binding GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0005875 C microtubule associated complex GO:0006974 P cellular response to DNA damage stimulus GO:0006979 P response to oxidative stress GO:0007155 P cell adhesion GO:0007281 P germ cell development GO:0008340 P determination of adult lifespan GO:0008354 P germ cell migration GO:0008379 F thioredoxin peroxidase activity GO:0010906 P regulation of glucose metabolic process GO:0016209 F antioxidant activity GO:0016491 F oxidoreductase activity GO:0042594 P response to starvation GO:0042744 P hydrogen peroxide catabolic process GO:0045454 P cell redox homeostasis GO:0051920 F peroxiredoxin activity GO:0055114 P obsolete oxidation-reduction process GO:0098869 P cellular oxidant detoxification
1167	O_BomaMSG11050_internal:A_BomaMSG_c21807_g1_i1 280bp		bifunctional_glutamate/proline--tRNA_ligase_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003723 F RNA binding GO:0003824 F catalytic activity GO:0004812 F aminoacyl-tRNA ligase activity GO:0004818 F glutamate-tRNA ligase activity GO:0004827 F proline-tRNA ligase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006412 P translation GO:0006418 P tRNA aminoacylation for protein translation GO:0006424 P glutamyl-tRNA aminoacylation GO:0006433 P prolyl-tRNA aminoacylation GO:0008152 P metabolic process GO:0016874 F ligase activity GO:0016876 F aminoacyl-tRNA ligase activity GO:0017101 C aminoacyl-tRNA synthetase multienzyme complex GO:0043039 P tRNA aminoacylation
1168	O_BomaMSG11051_internal:A_BomaMSG_c21808_g1_i1 625bp		uncharacterized_protein_LOC101737485_isoform_X2_[Bombyx_mori]
1169	O_BomaMSG11052_internal:A_BomaMSG_c21808_g1_i2 356bp		uncharacterized_protein_LOC101737485_isoform_X2_[Bombyx_mori]
1170	O_BomaMSG11053_internal:A_BomaMSG_c21808_g1_i3 418bp		uncharacterized_protein_LOC101737485_isoform_X2_[Bombyx_mori]