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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1021 O_BomaMSG1091_3prime_partial:A_BomaMSG_c4693_g1_i1
166bp
leucine-rich_repeat_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0016567 P protein ubiquitination
1022 O_BomaMSG10920_complete:A_BomaMSG_c21731_g1_i2
418bp
TRAF6_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000209 P protein polyubiquitination
GO:0001503 P ossification
GO:0001843 P neural tube closure
GO:0002376 P immune system process
GO:0002726 P positive regulation of T cell cytokine production
GO:0004842 F ubiquitin-protein transferase activity
GO:0005164 F tumor necrosis factor receptor binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006955 P immune response
GO:0007165 P signal transduction
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0008270 F zinc ion binding
GO:0009887 P animal organ morphogenesis
GO:0009898 C cytoplasmic side of plasma membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0019901 F protein kinase binding
GO:0030316 P osteoclast differentiation
GO:0031435 F mitogen-activated protein kinase kinase kinase binding
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0031666 P positive regulation of lipopolysaccharide-mediated signaling pathway
GO:0031996 F thioesterase binding
GO:0032147 P activation of protein kinase activity
GO:0032743 P positive regulation of interleukin-2 production
GO:0035631 C CD40 receptor complex
GO:0042088 P T-helper 1 type immune response
GO:0042102 P positive regulation of T cell proliferation
GO:0042475 P odontogenesis of dentin-containing tooth
GO:0042802 F identical protein binding
GO:0042826 F histone deacetylase binding
GO:0042981 P regulation of apoptotic process
GO:0043011 P myeloid dendritic cell differentiation
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043234 C protein-containing complex
GO:0043422 F protein kinase B binding
GO:0043507 P positive regulation of JUN kinase activity
GO:0045084 P positive regulation of interleukin-12 production
GO:0045410 P positive regulation of interleukin-6 production
GO:0045453 P bone resorption
GO:0045672 P positive regulation of osteoclast differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046849 P bone remodeling
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0048468 P cell development
GO:0048471 C perinuclear region of cytoplasm
GO:0050852 P T cell receptor signaling pathway
GO:0051023 P regulation of immunoglobulin production
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070498 P interleukin-1-mediated signaling pathway
GO:0070534 P protein K63-linked ubiquitination
GO:0070555 P response to interleukin-1
GO:0071222 P cellular response to lipopolysaccharide
GO:2000679 P positive regulation of transcription regulatory region DNA binding
1023 O_BomaMSG10921_5prime_partial:A_BomaMSG_c21732_g1_i2
113bp
uncharacterized_protein_LOC101746579_isoform_X2_[Bombyx_mori]
1024 O_BomaMSG10922_5prime_partial:A_BomaMSG_c21734_g1_i2
223bp
ORF_A_span_522-1895;_first_start_codon_at_663_[Autographa_californica_nucleopolyhedrovirus]
1025 O_BomaMSG10923_5prime_partial:A_BomaMSG_c21734_g1_i3
137bp
ORF_A_span_522-1895;_first_start_codon_at_663_[Autographa_californica_nucleopolyhedrovirus]
1026 O_BomaMSG10924_complete:A_BomaMSG_c21734_g1_i5
426bp
ORF_A_span_522-1895;_first_start_codon_at_663_[Autographa_californica_nucleopolyhedrovirus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0019012 C virion component
1027 O_BomaMSG10925_3prime_partial:A_BomaMSG_c21735_g1_i1
137bp
uncharacterized_protein_LOC110386573_[Bombyx_mori]
1028 O_BomaMSG10926_5prime_partial:A_BomaMSG_c21737_g1_i1
333bp
muscleblind-like_protein_isoform_X3_[Helicoverpa_armigera]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001654 P eye development
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007517 P muscle organ development
GO:0007525 P somatic muscle development
GO:0007601 P visual perception
GO:0009790 P embryo development
GO:0010468 P regulation of gene expression
GO:0030018 C Z disc
GO:0031673 C H zone
GO:0042052 P rhabdomere development
GO:0045924 P regulation of female receptivity
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050896 P response to stimulus
1029 O_BomaMSG10927_5prime_partial:A_BomaMSG_c21737_g1_i1
113bp
1030 O_BomaMSG10928_5prime_partial:A_BomaMSG_c21737_g1_i1
105bp
1031 O_BomaMSG10929_complete:A_BomaMSG_c21737_g1_i1
103bp
1032 O_BomaMSG1092_internal:A_BomaMSG_c4695_g1_i1
120bp
afadin_isoform_X2_[Bombyx_mori]
1033 O_BomaMSG10930_5prime_partial:A_BomaMSG_c21737_g1_i2
303bp
muscleblind-like_protein_isoform_X6_[Helicoverpa_armigera]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001654 P eye development
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007517 P muscle organ development
GO:0007525 P somatic muscle development
GO:0007601 P visual perception
GO:0009790 P embryo development
GO:0010468 P regulation of gene expression
GO:0030018 C Z disc
GO:0031673 C H zone
GO:0042052 P rhabdomere development
GO:0045924 P regulation of female receptivity
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050896 P response to stimulus
1034 O_BomaMSG10931_internal:A_BomaMSG_c21737_g1_i4
130bp
hypothetical_protein_RR48_08045_[Papilio_machaon]
1035 O_BomaMSG10932_3prime_partial:A_BomaMSG_c21738_g1_i1
234bp
phosphoglucomutase_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0004614 F phosphoglucomutase activity
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0016853 F isomerase activity
GO:0016868 F intramolecular transferase activity, phosphotransferases
GO:0046872 F metal ion binding
GO:0071704 P organic substance metabolic process
1036 O_BomaMSG10933_complete:A_BomaMSG_c21740_g1_i1
308bp
PREDICTED:_tRNA_methyltransferase_10_homolog_A_isoform_X1_[Papilio_machaon]
GO:0000049 F tRNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
1037 O_BomaMSG10934_3prime_partial:A_BomaMSG_c21742_g1_i1
123bp
nuclear_envelope_phosphatase-regulatory_subunit_1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0035307 P positive regulation of protein dephosphorylation
GO:0071595 C Nem1-Spo7 phosphatase complex
1038 O_BomaMSG10935_3prime_partial:A_BomaMSG_c21743_g1_i1
163bp
DnaJ_(Hsp40)_homolog_11_[Bombyx_mori]
GO:0005739 C mitochondrion
1039 O_BomaMSG10936_3prime_partial:A_BomaMSG_c21743_g1_i2
163bp
DnaJ_(Hsp40)_homolog_11_[Bombyx_mori]
GO:0005739 C mitochondrion
1040 O_BomaMSG10937_complete:A_BomaMSG_c21745_g2_i1
138bp
U7_snRNA-associated_Sm-like_protein_LSm10_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005683 C U7 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0017069 F snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0071208 F histone pre-mRNA DCP binding
GO:0071209 F U7 snRNA binding
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
1041 O_BomaMSG10938_internal:A_BomaMSG_c21746_g1_i1
361bp
RNA-binding_protein_45_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008150 P biological_process
GO:0030154 P cell differentiation
GO:0044822 F RNA binding
1042 O_BomaMSG10939_3prime_partial:A_BomaMSG_c21747_g2_i1
119bp
protein_muscleblind_isoform_X5_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001654 P eye development
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007517 P muscle organ development
GO:0007525 P somatic muscle development
GO:0007601 P visual perception
GO:0009790 P embryo development
GO:0010468 P regulation of gene expression
GO:0030018 C Z disc
GO:0031673 C H zone
GO:0042052 P rhabdomere development
GO:0045924 P regulation of female receptivity
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050896 P response to stimulus
1043 O_BomaMSG1093_internal:A_BomaMSG_c4695_g1_i1
119bp
1044 O_BomaMSG10940_3prime_partial:A_BomaMSG_c21747_g2_i2
119bp
protein_muscleblind_isoform_X5_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001654 P eye development
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0007422 P peripheral nervous system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007517 P muscle organ development
GO:0007525 P somatic muscle development
GO:0007601 P visual perception
GO:0009790 P embryo development
GO:0010468 P regulation of gene expression
GO:0030018 C Z disc
GO:0031673 C H zone
GO:0042052 P rhabdomere development
GO:0045924 P regulation of female receptivity
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0050896 P response to stimulus
1045 O_BomaMSG10941_internal:A_BomaMSG_c21748_g1_i1
1139bp
telomere-associated_protein_RIF1_[Bombyx_mori]
1046 O_BomaMSG10942_3prime_partial:A_BomaMSG_c21749_g1_i2
186bp
U3_small_nucleolar_RNA-associated_protein_4_homolog_[Bombyx_mori]
GO:0001650 C fibrillar center
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:0034455 C t-UTP complex
GO:0044822 F RNA binding
1047 O_BomaMSG10943_5prime_partial:A_BomaMSG_c21750_g1_i1
593bp
hypothetical_protein_RR48_14918_[Papilio_machaon]
1048 O_BomaMSG10944_complete:A_BomaMSG_c21750_g1_i1
134bp
1049 O_BomaMSG10945_5prime_partial:A_BomaMSG_c21752_g1_i1
122bp
nucleosome-remodeling_factor_subunit_NURF301_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0016922 F nuclear receptor binding
GO:0019233 P sensory perception of pain
GO:0030097 P hemopoiesis
GO:0035064 F methylated histone binding
GO:0035073 P pupariation
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0042766 P nucleosome mobilization
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045824 P negative regulation of innate immune response
GO:0046331 P lateral inhibition
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0046872 F metal ion binding
GO:0048515 P spermatid differentiation
GO:0048813 P dendrite morphogenesis
GO:0070577 F lysine-acetylated histone binding
GO:0070615 F ATP-dependent chromatin remodeler activity
1050 O_BomaMSG10946_5prime_partial:A_BomaMSG_c21752_g1_i2
410bp
nucleosome-remodeling_factor_subunit_NURF301_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0016922 F nuclear receptor binding
GO:0019233 P sensory perception of pain
GO:0030097 P hemopoiesis
GO:0035064 F methylated histone binding
GO:0035073 P pupariation
GO:0035076 P ecdysone receptor-mediated signaling pathway
GO:0042766 P nucleosome mobilization
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045824 P negative regulation of innate immune response
GO:0046331 P lateral inhibition
GO:0046426 P negative regulation of receptor signaling pathway via JAK-STAT
GO:0046872 F metal ion binding
GO:0048515 P spermatid differentiation
GO:0048813 P dendrite morphogenesis
GO:0070577 F lysine-acetylated histone binding
GO:0070615 F ATP-dependent chromatin remodeler activity
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