SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/206471
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5731 A_BomoIG_DN20473_c0_g2_i1
1103bp
FPKM:0.49 TPM:0.27
5732 A_BomoIG_DN20474_c0_g1_i1
1005bp
 integrin_beta3_[Bombyx_mori]
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0001954 P positive regulation of cell-matrix adhesion
GO:0001968 F fibronectin binding
GO:0002020 F protease binding
GO:0003756 F protein disulfide isomerase activity
GO:0004872 F signaling receptor activity
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006457 P protein folding
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0008305 C integrin complex
GO:0009897 C external side of plasma membrane
GO:0009986 C cell surface
GO:0010595 P positive regulation of endothelial cell migration
GO:0010628 P positive regulation of gene expression
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010763 P positive regulation of fibroblast migration
GO:0010888 P negative regulation of lipid storage
GO:0014909 P smooth muscle cell migration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016049 P cell growth
GO:0016324 C apical plasma membrane
GO:0016477 P cell migration
GO:0019899 F enzyme binding
GO:0019960 F C-X3-C chemokine binding
GO:0030054 C cell junction
GO:0030168 P platelet activation
GO:0030334 P regulation of cell migration
GO:0030335 P positive regulation of cell migration
GO:0031258 C lamellipodium membrane
GO:0031527 C filopodium membrane
GO:0031528 C microvillus membrane
GO:0031589 P cell-substrate adhesion
GO:0032147 P activation of protein kinase activity
GO:0032369 P negative regulation of lipid transport
GO:0032587 C ruffle membrane
GO:0032956 P regulation of actin cytoskeleton organization
GO:0033690 P positive regulation of osteoblast proliferation
GO:0034113 P heterotypic cell-cell adhesion
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0034679 C integrin alpha9-beta1 complex
GO:0034683 C integrin alphav-beta3 complex
GO:0036120 P cellular response to platelet-derived growth factor stimulus
GO:0038027 P apolipoprotein A-I-mediated signaling pathway
GO:0042470 C melanosome
GO:0042802 F identical protein binding
GO:0042995 C cell projection
GO:0043184 F vascular endothelial growth factor receptor 2 binding
GO:0043235 C receptor complex
GO:0045672 P positive regulation of osteoclast differentiation
GO:0045715 P obsolete negative regulation of low-density lipoprotein particle receptor biosynthetic process
GO:0045780 P positive regulation of bone resorption
GO:0046718 P viral entry into host cell
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0048146 P positive regulation of fibroblast proliferation
GO:0048858 P cell projection morphogenesis
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0050748 P negative regulation of lipoprotein metabolic process
GO:0050839 F cell adhesion molecule binding
GO:0050840 F extracellular matrix binding
GO:0050919 P negative chemotaxis
GO:0060055 P angiogenesis involved in wound healing
GO:0061097 P regulation of protein tyrosine kinase activity
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
GO:0071133 C alpha9-beta1 integrin-ADAM8 complex
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1903053 P regulation of extracellular matrix organization
GO:2000406 P positive regulation of T cell migration
FPKM:1.78 TPM:0.99
5733 A_BomoIG_DN20474_c0_g2_i1
814bp
 integrin_beta3_[Bombyx_mori]
GO:0005515 F protein binding
GO:0007155 P cell adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0008305 C integrin complex
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031430 C M band
GO:0032956 P regulation of actin cytoskeleton organization
GO:0040017 P positive regulation of locomotion
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045987 P positive regulation of smooth muscle contraction
GO:0055001 P muscle cell development
GO:0055120 C striated muscle dense body
GO:0060279 P positive regulation of ovulation
GO:1903356 P positive regulation of distal tip cell migration
GO:1904901 P positive regulation of myosin II filament organization
FPKM:1.09 TPM:0.60
5734 A_BomoIG_DN20475_c0_g1_i1
211bp
FPKM:0.96 TPM:0.53
5735 A_BomoIG_DN20476_c0_g1_i1
268bp
FPKM:0.17 TPM:0.09
5736 A_BomoIG_DN20477_c0_g1_i1
370bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:1.25 TPM:0.70
5737 A_BomoIG_DN20479_c0_g1_i1
211bp
FPKM:0.32 TPM:0.18
5738 A_BomoIG_DN20479_c0_g2_i1
460bp
FPKM:0.95 TPM:0.53
5739 A_BomoIG_DN20482_c0_g1_i1
343bp
 Metalloprotease_[Operophtera_brumata]
FPKM:0.00 TPM:0.00
5740 A_BomoIG_DN20482_c0_g1_i2
330bp
 Uncharacterized_protein_C12orf26-like_[Papilio_xuthus]
FPKM:0.33 TPM:0.18
5741 A_BomoIG_DN20485_c0_g1_i1
201bp
FPKM:0.38 TPM:0.21
5742 A_BomoIG_DN20487_c0_g1_i1
291bp
FPKM:0.98 TPM:0.55
5743 A_BomoIG_DN20488_c0_g1_i1
867bp
FPKM:2.23 TPM:1.24
5744 A_BomoIG_DN20489_c0_g1_i1
219bp
FPKM:0.57 TPM:0.32
5745 A_BomoIG_DN20497_c0_g1_i1
210bp
FPKM:0.32 TPM:0.18
5746 A_BomoIG_DN20498_c0_g1_i1
384bp
FPKM:1.09 TPM:0.61
5747 A_BomoIG_DN20499_c0_g1_i1
620bp
 tyrosine-protein_phosphatase_Lar_[Bombyx_mori]
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005875 C microtubule associated complex
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006470 P protein dephosphorylation
GO:0007155 P cell adhesion
GO:0007283 P spermatogenesis
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007412 P axon target recognition
GO:0008045 P motor neuron axon guidance
GO:0008201 F heparin binding
GO:0008360 P regulation of cell shape
GO:0008594 P photoreceptor cell morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030424 C axon
GO:0031290 P retinal ganglion cell axon guidance
GO:0032093 F SAM domain binding
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045467 P R7 cell development
GO:0048477 P oogenesis
GO:0048675 P axon extension
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0051124 P synaptic assembly at neuromuscular junction
GO:1903386 P negative regulation of homophilic cell adhesion
FPKM:8.73 TPM:4.86
5748 A_BomoIG_DN204_c0_g1_i1
291bp
FPKM:0.00 TPM:0.00
5749 A_BomoIG_DN20505_c0_g1_i1
526bp
FPKM:0.83 TPM:0.46
5750 A_BomoIG_DN2050_c0_g1_i1
450bp
FPKM:0.00 TPM:0.00
5751 A_BomoIG_DN20512_c0_g1_i1
256bp
FPKM:2.81 TPM:1.57
5752 A_BomoIG_DN20514_c0_g1_i1
257bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.19 TPM:0.10
5753 A_BomoIG_DN20516_c0_g1_i1
250bp
FPKM:0.40 TPM:0.22
5754 A_BomoIG_DN20517_c0_g1_i1
334bp
FPKM:0.96 TPM:0.54
5755 A_BomoIG_DN20519_c0_g1_i1
561bp
 circadian_clock-controlled_protein_[Bombyx_mori]
FPKM:0.57 TPM:0.32
5756 A_BomoIG_DN20519_c0_g1_i2
488bp
 circadian_clock-controlled_protein_[Bombyx_mori]
FPKM:0.12 TPM:0.07
5757 A_BomoIG_DN2051_c0_g1_i1
209bp
FPKM:0.00 TPM:0.00
5758 A_BomoIG_DN20520_c0_g1_i1
260bp
FPKM:1.44 TPM:0.80
5759 A_BomoIG_DN20524_c0_g1_i1
362bp
FPKM:1.11 TPM:0.62
5760 A_BomoIG_DN20526_c0_g1_i1
575bp
FPKM:0.09 TPM:0.05
previous next from show/206471

- SilkBase 1999-2023 -