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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2611 A_BomoMSG_c12882_g1_i2
487bp
FPKM:1.07 TPM:0.55
2612 A_BomoMSG_c12883_g1_i1
426bp
 mitochondrial_aldehyde_dehydrogenase_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004029 F aldehyde dehydrogenase (NAD+) activity
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006068 P ethanol catabolic process
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.52 TPM:0.79
2613 A_BomoMSG_c12884_g1_i1
462bp
 protein_Skeletor,_isoforms_B/C_isoform_X2_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
FPKM:4.03 TPM:2.10
2614 A_BomoMSG_c12885_g1_i1
279bp
FPKM:7.42 TPM:3.86
2615 A_BomoMSG_c12886_g1_i1
1258bp
 delta-aminolevulinic_acid_dehydratase_[Bombyx_mori]
GO:0001666 P response to hypoxia
GO:0003824 F catalytic activity
GO:0004655 F porphobilinogen synthase activity
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006779 P porphyrin-containing compound biosynthetic process
GO:0006782 P protoporphyrinogen IX biosynthetic process
GO:0006783 P heme biosynthetic process
GO:0006979 P response to oxidative stress
GO:0007584 P response to nutrient
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0009635 P response to herbicide
GO:0009636 P response to toxic substance
GO:0009725 P response to hormone
GO:0010033 P response to organic substance
GO:0010035 P response to inorganic substance
GO:0010038 P response to metal ion
GO:0010039 P response to iron ion
GO:0010043 P response to zinc ion
GO:0010044 P response to aluminum ion
GO:0010212 P response to ionizing radiation
GO:0010266 P response to vitamin B1
GO:0010269 P response to selenium ion
GO:0010288 P response to lead ion
GO:0014070 P response to organic cyclic compound
GO:0014823 P response to activity
GO:0016829 F lyase activity
GO:0031667 P response to nutrient levels
GO:0032025 P response to cobalt ion
GO:0032496 P response to lipopolysaccharide
GO:0032791 F lead ion binding
GO:0033014 P tetrapyrrole biosynthetic process
GO:0033197 P response to vitamin E
GO:0033273 P response to vitamin
GO:0042493 P response to xenobiotic stimulus
GO:0042802 F identical protein binding
GO:0043200 P response to amino acid
GO:0045471 P response to ethanol
GO:0046685 P response to arsenic-containing substance
GO:0046686 P response to cadmium ion
GO:0046689 P response to mercury ion
GO:0046872 F metal ion binding
GO:0051260 P protein homooligomerization
GO:0051384 P response to glucocorticoid
GO:0051597 P response to methylmercury
GO:0070062 C extracellular exosome
GO:0070541 P response to platinum ion
GO:0070542 P response to fatty acid
GO:0071284 P cellular response to lead ion
GO:0071353 P cellular response to interleukin-4
FPKM:26.53 TPM:13.80
2616 A_BomoMSG_c12887_g1_i1
503bp
 uncharacterized_protein_LOC101735328_[Bombyx_mori]
FPKM:2.89 TPM:1.50
2617 A_BomoMSG_c12888_g1_i1
934bp
 nucleoporin_NUP188_homolog_[Bombyx_mori]
FPKM:2.44 TPM:1.27
2618 A_BomoMSG_c12889_g1_i1
712bp
 sericin_1-like_isoform_X7_[Bombyx_mori]
GO:0005576 C extracellular region
FPKM:65187.23 TPM:33911.67
2619 A_BomoMSG_c12891_g1_i1
1064bp
 uncharacterized_protein_LOC101745332_isoform_X1_[Bombyx_mori]
FPKM:2.82 TPM:1.47
2620 A_BomoMSG_c12891_g1_i2
295bp
FPKM:0.00 TPM:0.00
2621 A_BomoMSG_c12892_g1_i1
984bp
 protein_FAM192A_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0008150 P biological_process
FPKM:31.05 TPM:16.15
2622 A_BomoMSG_c12893_g1_i1
427bp
FPKM:6.92 TPM:3.60
2623 A_BomoMSG_c12895_g1_i1
595bp
FPKM:5.12 TPM:2.66
2624 A_BomoMSG_c12896_g1_i1
356bp
FPKM:1.75 TPM:0.91
2625 A_BomoMSG_c12898_g1_i1
374bp
 zinc_finger_protein_OZF_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.87 TPM:0.97
2626 A_BomoMSG_c12899_g1_i1
291bp
 PREDICTED:_dystrophin,_isoforms_A/C/F/G/H-like_[Amyelois_transitella]
FPKM:2.55 TPM:1.33
2627 A_BomoMSG_c1289_g1_i1
399bp
 PHD_finger_protein_14_[Bombyx_mori]
FPKM:1.20 TPM:0.63
2628 A_BomoMSG_c128_g1_i1
433bp
 membrane-bound_transcription_factor_site-1_protease,_partial_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004175 F endopeptidase activity
GO:0004252 F serine-type endopeptidase activity
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006508 P proteolysis
GO:0006629 P lipid metabolic process
GO:0007040 P lysosome organization
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031293 P membrane protein intracellular domain proteolysis
GO:0034976 P response to endoplasmic reticulum stress
GO:0036500 P ATF6-mediated unfolded protein response
GO:0042990 P obsolete regulation of transcription factor import into nucleus
FPKM:2.33 TPM:1.21
2629 A_BomoMSG_c12900_g1_i1
306bp
FPKM:3.84 TPM:2.00
2630 A_BomoMSG_c12902_g1_i1
739bp
 histone-lysine_N-methyltransferase_trithorax_isoform_X1_[Helicoverpa_armigera]
FPKM:2.24 TPM:1.16
2631 A_BomoMSG_c12904_g1_i1
217bp
FPKM:4.31 TPM:2.24
2632 A_BomoMSG_c12905_g1_i1
545bp
 zonadhesin_isoform_X2_[Bombyx_mori]
FPKM:3.34 TPM:1.74
2633 A_BomoMSG_c12906_g1_i1
262bp
FPKM:3.73 TPM:1.94
2634 A_BomoMSG_c12909_g1_i1
1330bp
 1-phosphatidylinositol_3-phosphate_5-kinase_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000285 F 1-phosphatidylinositol-3-phosphate 5-kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005911 C cell-cell junction
GO:0008270 F zinc ion binding
GO:0010008 C endosome membrane
GO:0012506 C vesicle membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016307 F phosphatidylinositol phosphate kinase activity
GO:0016308 F 1-phosphatidylinositol-4-phosphate 5-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0032288 P myelin assembly
GO:0032593 C insulin-responsive compartment
GO:0034504 P protein localization to nucleus
GO:0035556 P intracellular signal transduction
GO:0042147 P retrograde transport, endosome to Golgi
GO:0045121 C membrane raft
GO:0046488 P phosphatidylinositol metabolic process
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0052810 F 1-phosphatidylinositol-5-kinase activity
GO:2000785 P regulation of autophagosome assembly
FPKM:2.49 TPM:1.29
2635 A_BomoMSG_c1290_g1_i1
229bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC110369601_[Helicoverpa_armigera]
FPKM:1.48 TPM:0.77
2636 A_BomoMSG_c12910_g1_i1
422bp
FPKM:1.75 TPM:0.91
2637 A_BomoMSG_c12910_g1_i2
1685bp
 heterogeneous_nuclear_ribonucleoprotein_K_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
FPKM:31.98 TPM:16.64
2638 A_BomoMSG_c12911_g1_i1
494bp
 eIF-2-alpha_kinase_activator_GCN1_[Bombyx_mori]
FPKM:4.01 TPM:2.08
2639 A_BomoMSG_c12912_g1_i1
2629bp
 transcription_elongation_factor_B_polypeptide_1_isoform_X1_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0030891 C VCB complex
GO:0032403 F protein-containing complex binding
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0070449 C elongin complex
FPKM:40.66 TPM:21.15
2640 A_BomoMSG_c12914_g1_i1
322bp
FPKM:5.58 TPM:2.90
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