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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2551 A_BomoMSG_c12825_g1_i1
328bp
FPKM:8.76 TPM:4.55
2552 A_BomoMSG_c12826_g1_i1
471bp
 modifier_of_mdg4_[Papilio_polytes]
FPKM:3.17 TPM:1.65
2553 A_BomoMSG_c12827_g1_i1
529bp
FPKM:3.32 TPM:1.73
2554 A_BomoMSG_c12829_g1_i1
518bp
 E3_ubiquitin-protein_ligase_SMURF2_isoform_X2_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006464 P cellular protein modification process
GO:0007398 P ectoderm development
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0030509 P BMP signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0042787 P ubiquitin-dependent protein catabolic process
FPKM:3.91 TPM:2.03
2555 A_BomoMSG_c12830_g1_i1
478bp
FPKM:1.83 TPM:0.95
2556 A_BomoMSG_c12831_g1_i1
336bp
FPKM:1.93 TPM:1.01
2557 A_BomoMSG_c12832_g1_i1
448bp
 hypothetical_protein_RR48_09052_[Papilio_machaon]
FPKM:29.76 TPM:15.48
2558 A_BomoMSG_c12832_g1_i2
204bp
 hypothetical_protein_RR48_09052_[Papilio_machaon]
FPKM:14.54 TPM:7.56
2559 A_BomoMSG_c12833_g1_i1
314bp
 uncharacterized_protein_LOC101743023_[Bombyx_mori]
FPKM:5.48 TPM:2.85
2560 A_BomoMSG_c12834_g1_i1
914bp
 midasin_isoform_X1_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006461 P protein-containing complex assembly
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045111 C intermediate filament cytoskeleton
GO:0051082 F unfolded protein binding
FPKM:2.43 TPM:1.26
2561 A_BomoMSG_c12834_g2_i1
448bp
 midasin_isoform_X1_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006461 P protein-containing complex assembly
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045111 C intermediate filament cytoskeleton
GO:0051082 F unfolded protein binding
FPKM:1.81 TPM:0.94
2562 A_BomoMSG_c12835_g1_i1
546bp
 SID-1-like_protein,_partial_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033227 P dsRNA transport
GO:0051033 F RNA transmembrane transporter activity
FPKM:1.05 TPM:0.55
2563 A_BomoMSG_c12835_g1_i2
840bp
 sid-1-like_protein2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033227 P dsRNA transport
GO:0051033 F RNA transmembrane transporter activity
FPKM:1.13 TPM:0.59
2564 A_BomoMSG_c12836_g1_i1
317bp
FPKM:12.56 TPM:6.53
2565 A_BomoMSG_c12838_g1_i1
289bp
FPKM:7.32 TPM:3.81
2566 A_BomoMSG_c12839_g1_i1
227bp
FPKM:6.83 TPM:3.56
2567 A_BomoMSG_c1283_g1_i1
211bp
FPKM:2.81 TPM:1.46
2568 A_BomoMSG_c12840_g1_i1
384bp
 Chain_A,_Sp2-sp3_-_A_Complex_Of_Two_Storage_Proteins_From_Bombyx_Mori_Hemolymph
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0045735 F nutrient reservoir activity
FPKM:3.07 TPM:1.60
2569 A_BomoMSG_c12840_g2_i1
444bp
 Chain_A,_Sp2-sp3_-_A_Complex_Of_Two_Storage_Proteins_From_Bombyx_Mori_Hemolymph
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0045735 F nutrient reservoir activity
FPKM:0.20 TPM:0.11
2570 A_BomoMSG_c12842_g1_i1
290bp
 LOW_QUALITY_PROTEIN:_dynein_heavy_chain_2,_axonemal-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001539 P cilium or flagellum-dependent cell motility
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005858 C axonemal dynein complex
GO:0005874 C microtubule
GO:0005929 C cilium
GO:0007018 P microtubule-based movement
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
GO:0030286 C dynein complex
GO:0042995 C cell projection
FPKM:2.14 TPM:1.11
2571 A_BomoMSG_c12846_g1_i1
340bp
FPKM:2.53 TPM:1.31
2572 A_BomoMSG_c12847_g1_i1
389bp
 transcription_initiation_factor_TFIID_subunit_3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:4.51 TPM:2.35
2573 A_BomoMSG_c12848_g1_i1
749bp
 uncharacterized_protein_LOC101741223_[Bombyx_mori]
FPKM:2.20 TPM:1.14
2574 A_BomoMSG_c12849_g1_i1
259bp
FPKM:3.28 TPM:1.71
2575 A_BomoMSG_c1284_g1_i1
1814bp
 CD63_antigen_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005771 C multivesicular body
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0009986 C cell surface
GO:0010008 C endosome membrane
GO:0010633 P negative regulation of epithelial cell migration
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016477 P cell migration
GO:0030855 P epithelial cell differentiation
GO:0031226 C intrinsic component of plasma membrane
GO:0031902 C late endosome membrane
GO:0031904 C endosome lumen
GO:0032403 F protein-containing complex binding
GO:0032585 C multivesicular body membrane
GO:0034613 P cellular protein localization
GO:0035646 P endosome to melanosome transport
GO:0042470 C melanosome
GO:0043234 C protein-containing complex
GO:0043473 P pigmentation
GO:0045785 P positive regulation of cell adhesion
GO:0045807 P positive regulation of endocytosis
GO:0048757 P pigment granule maturation
GO:0050931 P pigment cell differentiation
GO:0070062 C extracellular exosome
GO:0097487 C multivesicular body, internal vesicle
GO:1900746 P regulation of vascular endothelial growth factor signaling pathway
GO:2000680 P obsolete regulation of rubidium ion transport
GO:2001046 P positive regulation of integrin-mediated signaling pathway
FPKM:119.08 TPM:61.95
2576 A_BomoMSG_c12850_g1_i1
289bp
FPKM:0.00 TPM:0.00
2577 A_BomoMSG_c12850_g1_i2
235bp
FPKM:6.35 TPM:3.30
2578 A_BomoMSG_c12850_g1_i3
278bp
FPKM:1.32 TPM:0.69
2579 A_BomoMSG_c12851_g1_i1
444bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:1.63 TPM:0.85
2580 A_BomoMSG_c12852_g1_i1
254bp
FPKM:4.00 TPM:2.08
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