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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
901 A_BomoASG_c11371_g1_i1
239bp
 hydroxyacid_oxidase_1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003973 F (S)-2-hydroxy-acid oxidase activity
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0009853 P photorespiration
GO:0009854 P oxidative photosynthetic carbon pathway
GO:0010181 F FMN binding
GO:0010204 P innate immune response-activating signal transduction
GO:0016491 F oxidoreductase activity
GO:0042742 P defense response to bacterium
GO:0050665 P hydrogen peroxide biosynthetic process
GO:0052852 F (S)-2-hydroxy-acid oxidase activity
GO:0052853 F (S)-2-hydroxy-acid oxidase activity
GO:0052854 F (S)-2-hydroxy-acid oxidase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:5.39 TPM:4.14
902 A_BomoASG_c11372_g1_i1
574bp
 putative_nuclease_HARBI1_[Bombyx_mori]
FPKM:0.98 TPM:0.75
903 A_BomoASG_c11374_g1_i1
301bp
FPKM:3.59 TPM:2.76
904 A_BomoASG_c11375_g1_i1
201bp
FPKM:2.23 TPM:1.71
905 A_BomoASG_c11377_g1_i1
447bp
 HIV_Tat-specific_factor_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
FPKM:22.73 TPM:17.44
906 A_BomoASG_c11378_g1_i1
246bp
FPKM:1.88 TPM:1.44
907 A_BomoASG_c11379_g1_i1
615bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105663013_[Megachile_rotundata]
FPKM:3.97 TPM:3.04
908 A_BomoASG_c11380_g1_i1
437bp
 LOW_QUALITY_PROTEIN:_notch-like_protein_isoform_X1_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0001527 C microfibril
GO:0001656 P metanephros development
GO:0001822 P kidney development
GO:0005178 F integrin binding
GO:0005201 F extracellular matrix structural constituent
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0007507 P heart development
GO:0022617 P extracellular matrix disassembly
GO:0030023 F extracellular matrix constituent conferring elasticity
GO:0030198 P extracellular matrix organization
GO:0031012 C extracellular matrix
GO:0032403 F protein-containing complex binding
GO:0035582 P sequestering of BMP in extracellular matrix
GO:0035583 P sequestering of TGFbeta in extracellular matrix
GO:0043010 P camera-type eye development
GO:0048048 P embryonic eye morphogenesis
GO:0048050 P post-embryonic eye morphogenesis
GO:0070062 C extracellular exosome
GO:0071560 P cellular response to transforming growth factor beta stimulus
GO:0090287 P regulation of cellular response to growth factor stimulus
GO:1990314 P cellular response to insulin-like growth factor stimulus
FPKM:2.08 TPM:1.60
909 A_BomoASG_c11382_g1_i1
289bp
FPKM:2.17 TPM:1.66
910 A_BomoASG_c11384_g1_i1
224bp
FPKM:3.21 TPM:2.46
911 A_BomoASG_c11386_g1_i1
790bp
 26S_proteasome_non-ATPase_regulatory_subunit_10-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0007253 P cytoplasmic sequestering of NF-kappaB
GO:0008134 F transcription factor binding
GO:0008540 C proteasome regulatory particle, base subcomplex
GO:0030307 P positive regulation of cell growth
GO:0031398 P positive regulation of protein ubiquitination
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0043409 P negative regulation of MAPK cascade
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0045111 C intermediate filament cytoskeleton
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0070682 P proteasome regulatory particle assembly
GO:0090201 P negative regulation of release of cytochrome c from mitochondria
FPKM:59.76 TPM:45.84
912 A_BomoASG_c11387_g1_i1
292bp
FPKM:0.85 TPM:0.65
913 A_BomoASG_c1138_g1_i1
208bp
FPKM:0.00 TPM:0.00
914 A_BomoASG_c11390_g1_i1
703bp
FPKM:46.96 TPM:36.02
915 A_BomoASG_c11393_g1_i1
267bp
FPKM:4.64 TPM:3.56
916 A_BomoASG_c11394_g1_i1
411bp
FPKM:1.38 TPM:1.06
917 A_BomoASG_c11395_g1_i1
255bp
FPKM:3.44 TPM:2.64
918 A_BomoASG_c11398_g1_i1
814bp
FPKM:3.22 TPM:2.47
919 A_BomoASG_c11399_g1_i1
740bp
 trafficking_protein_particle_complex_subunit_5_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0016192 P vesicle-mediated transport
FPKM:22.46 TPM:17.22
920 A_BomoASG_c113_g1_i1
246bp
FPKM:3.76 TPM:2.88
921 A_BomoASG_c11401_g1_i1
226bp
FPKM:2.35 TPM:1.80
922 A_BomoASG_c11403_g1_i1
451bp
GO:0003676 F nucleic acid binding
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0016430 F tRNA (adenine-N6-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
FPKM:4.96 TPM:3.81
923 A_BomoASG_c11405_g1_i1
245bp
FPKM:0.63 TPM:0.49
924 A_BomoASG_c11406_g1_i1
205bp
FPKM:4.19 TPM:3.21
925 A_BomoASG_c1140_g1_i1
212bp
FPKM:2.83 TPM:2.17
926 A_BomoASG_c11410_g1_i1
463bp
 monocarboxylate_transporter_10_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0009914 P hormone transport
GO:0015293 F symporter activity
GO:0015349 F thyroid hormone transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:0070327 P thyroid hormone transport
FPKM:3.24 TPM:2.49
927 A_BomoASG_c11411_g1_i1
232bp
FPKM:2.19 TPM:1.68
928 A_BomoASG_c11412_g1_i1
295bp
FPKM:0.83 TPM:0.64
929 A_BomoASG_c11414_g1_i1
272bp
FPKM:1.48 TPM:1.14
930 A_BomoASG_c11415_g1_i1
259bp
FPKM:3.87 TPM:2.97
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