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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
841 A_BomoASG_c11284_g1_i1
223bp
FPKM:5.69 TPM:4.37
842 A_BomoASG_c11285_g1_i1
386bp
 hypothetical_protein_AB894_15365,_partial_[Piscirickettsia_salmonis]
FPKM:1.52 TPM:1.17
843 A_BomoASG_c11286_g1_i1
264bp
FPKM:7.94 TPM:6.09
844 A_BomoASG_c11287_g1_i1
383bp
 LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016592 C mediator complex
GO:0030518 P intracellular steroid hormone receptor signaling pathway
GO:0070847 C core mediator complex
FPKM:11.58 TPM:8.88
845 A_BomoASG_c11289_g1_i1
448bp
FPKM:2.01 TPM:1.54
846 A_BomoASG_c11290_g1_i1
272bp
FPKM:1.98 TPM:1.52
847 A_BomoASG_c11295_g1_i1
511bp
FPKM:1.82 TPM:1.39
848 A_BomoASG_c11297_g1_i1
305bp
FPKM:1.56 TPM:1.19
849 A_BomoASG_c11298_g1_i1
482bp
FPKM:4.85 TPM:3.72
850 A_BomoASG_c11299_g1_i1
265bp
FPKM:2.10 TPM:1.61
851 A_BomoASG_c11300_g1_i1
284bp
FPKM:1.80 TPM:1.38
852 A_BomoASG_c11301_g1_i1
642bp
 PREDICTED:_uncharacterized_protein_LOC105564750,_partial_[Vollenhovia_emeryi]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.93 TPM:1.48
853 A_BomoASG_c11302_g1_i1
212bp
FPKM:0.00 TPM:0.00
854 A_BomoASG_c11303_g1_i1
360bp
 uncharacterized_protein_LOC101745471_isoform_X2_[Bombyx_mori]
FPKM:2.86 TPM:2.19
855 A_BomoASG_c11305_g1_i1
255bp
FPKM:1.15 TPM:0.88
856 A_BomoASG_c11306_g1_i1
275bp
 PREDICTED:_uncharacterized_protein_LOC106711407_[Papilio_machaon]
FPKM:1.45 TPM:1.11
857 A_BomoASG_c11306_g1_i2
216bp
 PREDICTED:_uncharacterized_protein_LOC106711407_[Papilio_machaon]
FPKM:0.00 TPM:0.00
858 A_BomoASG_c11307_g1_i1
264bp
 hypothetical_protein_[Escherichia_coli]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:26.99 TPM:20.70
859 A_BomoASG_c11308_g1_i1
316bp
FPKM:2.54 TPM:1.95
860 A_BomoASG_c1130_g1_i1
201bp
FPKM:2.23 TPM:1.71
861 A_BomoASG_c11311_g1_i1
422bp
 protein_EFR3_homolog_cmp44E_[Bombyx_mori]
FPKM:8.14 TPM:6.24
862 A_BomoASG_c11313_g1_i1
203bp
 actin_cytoskeleton-regulatory_complex_protein_pan-1-like_[Bombyx_mori]
FPKM:3.24 TPM:2.49
863 A_BomoASG_c11315_g1_i1
259bp
FPKM:2.77 TPM:2.12
864 A_BomoASG_c11317_g1_i1
759bp
 uncharacterized_protein_LOC101742852_[Bombyx_mori]
FPKM:26.43 TPM:20.28
865 A_BomoASG_c11319_g1_i1
411bp
 rac_GTPase-activating_protein_1_isoform_X1_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0000915 P actomyosin contractile ring assembly
GO:0001669 C acrosomal vesicle
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007018 P microtubule-based movement
GO:0007049 P cell cycle
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007405 P neuroblast proliferation
GO:0008017 F microtubule binding
GO:0008272 P sulfate transport
GO:0008289 F lipid binding
GO:0009790 P embryo development
GO:0016020 C membrane
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0019901 F protein kinase binding
GO:0030154 P cell differentiation
GO:0030496 C midbody
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0031410 C cytoplasmic vesicle
GO:0032154 C cleavage furrow
GO:0032467 P positive regulation of cytokinesis
GO:0035556 P intracellular signal transduction
GO:0043014 F alpha-tubulin binding
GO:0043015 F gamma-tubulin binding
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0048487 F beta-tubulin binding
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0051233 C spindle midzone
GO:0051256 P mitotic spindle midzone assembly
GO:0051301 P cell division
GO:0051988 P regulation of attachment of spindle microtubules to kinetochore
GO:0070062 C extracellular exosome
GO:0072686 C mitotic spindle
GO:0097149 C centralspindlin complex
FPKM:1.61 TPM:1.23
866 A_BomoASG_c11320_g1_i1
219bp
 thyroid_adenoma-associated_protein_homolog_[Bombyx_mori]
FPKM:5.14 TPM:3.94
867 A_BomoASG_c11321_g1_i1
352bp
FPKM:3.27 TPM:2.51
868 A_BomoASG_c11322_g1_i1
247bp
 hypothetical_protein_ALC60_09160_[Trachymyrmex_zeteki]
FPKM:1.24 TPM:0.95
869 A_BomoASG_c11324_g1_i1
451bp
 uncharacterized_protein_LOC101744858_isoform_X2_[Bombyx_mori]
FPKM:1.39 TPM:1.07
870 A_BomoASG_c11325_g1_i1
358bp
 UPF0764_protein_C16orf89-like_[Bombyx_mori]
FPKM:4.04 TPM:3.10
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