SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/58621
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3391 A_BomoASG_c14259_g1_i1
225bp
FPKM:6.35 TPM:4.87
3392 A_BomoASG_c14260_g1_i1
221bp
FPKM:8.34 TPM:6.40
3393 A_BomoASG_c14261_g1_i1
560bp
FPKM:2.91 TPM:2.23
3394 A_BomoASG_c14262_g1_i1
352bp
FPKM:1.19 TPM:0.91
3395 A_BomoASG_c14263_g1_i1
210bp
FPKM:2.69 TPM:2.06
3396 A_BomoASG_c14263_g1_i2
430bp
FPKM:0.90 TPM:0.69
3397 A_BomoASG_c14264_g1_i1
307bp
FPKM:9.98 TPM:7.65
3398 A_BomoASG_c14266_g1_i1
439bp
 proton-coupled_amino_acid_transporter_2_[Bombyx_mori]
GO:0003333 P amino acid transmembrane transport
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015196 F L-tryptophan transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015808 P L-alanine transport
GO:0015824 P proline transport
GO:0015827 P tryptophan transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
FPKM:4.96 TPM:3.81
3399 A_BomoASG_c14267_g1_i1
588bp
FPKM:4.89 TPM:3.75
3400 A_BomoASG_c14269_g1_i1
483bp
FPKM:4.84 TPM:3.71
3401 A_BomoASG_c1426_g1_i1
368bp
FPKM:7.43 TPM:5.70
3402 A_BomoASG_c14270_g1_i1
354bp
FPKM:2.65 TPM:2.03
3403 A_BomoASG_c14272_g1_i1
320bp
FPKM:11.69 TPM:8.96
3404 A_BomoASG_c14273_g1_i1
293bp
FPKM:6.75 TPM:5.18
3405 A_BomoASG_c14274_g1_i1
467bp
FPKM:1.88 TPM:1.44
3406 A_BomoASG_c14275_g1_i1
527bp
 uncharacterized_protein_LOC101740309_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.16 TPM:2.43
3407 A_BomoASG_c14276_g1_i1
785bp
FPKM:3.37 TPM:2.58
3408 A_BomoASG_c14277_g1_i1
5584bp
 brefeldin_A-inhibited_guanine_nucleotide-exchange_protein_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007030 P Golgi organization
GO:0010256 P endomembrane system organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016363 C nuclear matrix
GO:0017022 F myosin binding
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030837 P negative regulation of actin filament polymerization
GO:0031175 P neuron projection development
GO:0032012 P regulation of ARF protein signal transduction
GO:0034237 F protein kinase A regulatory subunit binding
GO:0034260 P negative regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
GO:0051897 P positive regulation of protein kinase B signaling
GO:0090284 P positive regulation of protein glycosylation in Golgi
GO:0090303 P positive regulation of wound healing
GO:2000114 P regulation of establishment of cell polarity
FPKM:76.68 TPM:58.82
3409 A_BomoASG_c14278_g1_i1
459bp
FPKM:9.66 TPM:7.41
3410 A_BomoASG_c14279_g1_i1
284bp
 PREDICTED:_uncharacterized_protein_LOC105204981_[Solenopsis_invicta]
FPKM:3.15 TPM:2.42
3411 A_BomoASG_c14279_g2_i1
208bp
 PREDICTED:_uncharacterized_protein_LOC106126988_[Papilio_xuthus]
FPKM:1.00 TPM:0.77
3412 A_BomoASG_c14280_g1_i1
695bp
 Fruitless,_isoform_B_[Operophtera_brumata]
GO:0002118 P aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007417 P central nervous system development
GO:0007517 P muscle organ development
GO:0007530 P sex determination
GO:0007617 P mating behavior
GO:0007618 P mating
GO:0007620 P copulation
GO:0008049 P male courtship behavior
GO:0016199 P axon midline choice point recognition
GO:0016543 P male courtship behavior, orientation prior to leg tapping and wing vibration
GO:0016544 P male courtship behavior, tapping to detect pheromone
GO:0016545 P male courtship behavior, veined wing vibration
GO:0021954 P central nervous system neuron development
GO:0044719 P regulation of imaginal disc-derived wing size
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0046661 P male sex differentiation
GO:0046872 F metal ion binding
GO:0048047 P mating behavior, sex discrimination
GO:0048065 P male courtship behavior, veined wing extension
GO:0048813 P dendrite morphogenesis
GO:0060179 P male mating behavior
FPKM:2.29 TPM:1.76
3413 A_BomoASG_c14281_g1_i1
278bp
 uncharacterized_protein_LOC101737535_[Bombyx_mori]
FPKM:6.60 TPM:5.06
3414 A_BomoASG_c14282_g1_i1
865bp
 puromycin-sensitive_aminopeptidase-like_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004177 F aminopeptidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0042277 F peptide binding
GO:0043171 P peptide catabolic process
GO:0046872 F metal ion binding
GO:0070006 F metalloaminopeptidase activity
GO:0070062 C extracellular exosome
GO:0071456 P cellular response to hypoxia
GO:1903955 P positive regulation of protein targeting to mitochondrion
FPKM:2.49 TPM:1.91
3415 A_BomoASG_c14283_g1_i1
245bp
 furin-like_protease_2_[Bombyx_mori]
FPKM:4.43 TPM:3.40
3416 A_BomoASG_c14284_g1_i1
244bp
 LOW_QUALITY_PROTEIN:_papilin_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030198 P extracellular matrix organization
GO:0030414 F peptidase inhibitor activity
GO:0031012 C extracellular matrix
FPKM:2.56 TPM:1.96
3417 A_BomoASG_c14285_g1_i1
233bp
FPKM:0.72 TPM:0.55
3418 A_BomoASG_c14286_g1_i1
345bp
FPKM:2.47 TPM:1.89
3419 A_BomoASG_c14288_g1_i1
224bp
FPKM:0.80 TPM:0.62
3420 A_BomoASG_c14289_g1_i1
3203bp
 TOM1-like_protein_2_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0015031 P protein transport
GO:0019901 F protein kinase binding
GO:0030276 F clathrin binding
GO:0045839 P negative regulation of mitotic nuclear division
GO:0070062 C extracellular exosome
FPKM:50.43 TPM:38.68
previous next from show/58621

- SilkBase 1999-2023 -