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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

1981

A_BomoASG_c12708_g1_i1

259bp

Bomo_Chr24

FPKM:1.66 TPM:1.27

1982

A_BomoASG_c12708_g2_i1

1065bp

Bomo_Chr24

ferritin_precursor_[Bombyx_mori]

GO:0004322	F	ferroxidase activity
GO:0005576	C	extracellular region
GO:0005623	C	obsolete cell
GO:0006826	P	iron ion transport
GO:0006879	P	cellular iron ion homeostasis
GO:0008199	F	ferric iron binding
GO:0016491	F	oxidoreductase activity
GO:0046872	F	metal ion binding
GO:0055114	P	obsolete oxidation-reduction process

FPKM:477.10 TPM:365.96

1983

A_BomoASG_c12709_g1_i1

261bp

Bomo_Chr4

FPKM:6.52 TPM:5.00

1984

A_BomoASG_c12710_g1_i1

401bp

Bomo_Chr17

serine/threonine-protein_kinase_ATR_[Bombyx_mori]

GO:0000076	P	DNA replication checkpoint signaling
GO:0000077	P	DNA damage checkpoint signaling
GO:0000166	F	nucleotide binding
GO:0000706	P	meiotic DNA double-strand break processing
GO:0000723	P	telomere maintenance
GO:0001700	P	embryonic development via the syncytial blastoderm
GO:0003677	F	DNA binding
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006281	P	DNA repair
GO:0006468	P	protein phosphorylation
GO:0006974	P	cellular response to DNA damage stimulus
GO:0007015	P	actin filament organization
GO:0007088	P	regulation of mitotic nuclear division
GO:0007093	P	mitotic cell cycle checkpoint signaling
GO:0007095	P	mitotic G2 DNA damage checkpoint signaling
GO:0007126	P	meiotic cell cycle
GO:0007131	P	reciprocal meiotic recombination
GO:0007275	P	multicellular organism development
GO:0007348	P	regulation of syncytial blastoderm mitotic cell cycle
GO:0007349	P	cellularization
GO:0007444	P	imaginal disc development
GO:0008360	P	regulation of cell shape
GO:0009314	P	response to radiation
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016321	P	female meiosis chromosome segregation
GO:0016740	F	transferase activity
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0018105	P	peptidyl-serine phosphorylation
GO:0030261	P	chromosome condensation
GO:0031000	P	response to caffeine
GO:0033314	P	mitotic DNA replication checkpoint signaling
GO:0045002	P	double-strand break repair via single-strand annealing
GO:0045003	P	double-strand break repair via synthesis-dependent strand annealing
GO:0048477	P	oogenesis

FPKM:4.06 TPM:3.11

1985

A_BomoASG_c12712_g1_i1

486bp

Bomo_Chr25

FPKM:1.24 TPM:0.95

1986

A_BomoASG_c12713_g1_i1

206bp

Bomo_Chr5

FPKM:0.00 TPM:0.00

1987

A_BomoASG_c12715_g1_i1

576bp

Bomo_Chr25

uncharacterized_protein_LOC101739942_[Bombyx_mori]

FPKM:1.68 TPM:1.29

1988

A_BomoASG_c12716_g1_i1

260bp

Bomo_Chr6

Steroid_hormone_receptor_ERR2_[Larimichthys_crocea]

GO:0000122	P	negative regulation of transcription by RNA polymerase II
GO:0000977	F	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0003707	F	steroid hormone receptor activity
GO:0004879	F	nuclear receptor activity
GO:0004887	F	nuclear receptor activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007552	P	metamorphosis
GO:0008270	F	zinc ion binding
GO:0016319	P	mushroom body development
GO:0030522	P	intracellular receptor signaling pathway
GO:0040034	P	regulation of development, heterochronic
GO:0043401	P	steroid hormone mediated signaling pathway
GO:0043565	F	sequence-specific DNA binding
GO:0045944	P	positive regulation of transcription by RNA polymerase II
GO:0046872	F	metal ion binding

FPKM:3.29 TPM:2.52

1989

A_BomoASG_c1271_g1_i1

740bp

Bomo_Chr23

FPKM:8.46 TPM:6.49

1990

A_BomoASG_c12721_g1_i1

347bp

Bomo_Chr1

FPKM:1.52 TPM:1.17

1991

A_BomoASG_c12722_g1_i1

343bp

Bomo_Chr19

FPKM:4.98 TPM:3.82

1992

A_BomoASG_c12723_g1_i1

484bp

Bomo_Chr2

S-adenosylhomocysteine_hydrolase-like_protein_1_isoform_X3_[Bombyx_mori]

GO:0003723	F	RNA binding
GO:0004013	F	adenosylhomocysteinase activity
GO:0005737	C	cytoplasm
GO:0005783	C	endoplasmic reticulum
GO:0005829	C	cytosol
GO:0005886	C	plasma membrane
GO:0006378	P	mRNA polyadenylation
GO:0006611	P	protein export from nucleus
GO:0006730	P	one-carbon metabolic process
GO:0010765	P	positive regulation of sodium ion transport
GO:0016020	C	membrane
GO:0016324	C	apical plasma membrane
GO:0016787	F	hydrolase activity
GO:0031440	P	regulation of mRNA 3'-end processing
GO:0032412	P	regulation of ion transmembrane transporter activity
GO:0033353	P	S-adenosylmethionine cycle
GO:0038166	P	angiotensin-activated signaling pathway
GO:0042045	P	epithelial fluid transport
GO:0043231	C	intracellular membrane-bounded organelle
GO:0044070	P	regulation of anion transport
GO:0051592	P	response to calcium ion
GO:0070062	C	extracellular exosome

FPKM:2.14 TPM:1.64

1993

A_BomoASG_c12724_g1_i1

318bp

Bomo_Chr18

FPKM:3.58 TPM:2.75

1994

A_BomoASG_c12725_g1_i1

347bp

Bomo_Chr12

FPKM:1.83 TPM:1.40

1995

A_BomoASG_c12731_g1_i1

607bp

Bomo_Chr16

uncharacterized_protein_LOC101745141_[Bombyx_mori]

GO:0001890	P	placenta development
GO:0001892	P	embryonic placenta development
GO:0005215	F	transporter activity
GO:0005546	F	phosphatidylinositol-4,5-bisphosphate binding
GO:0005622	C	intracellular anatomical structure
GO:0005737	C	cytoplasm
GO:0005770	C	late endosome
GO:0005829	C	cytosol
GO:0006810	P	transport
GO:0007584	P	response to nutrient
GO:0008289	F	lipid binding
GO:0008431	F	vitamin E binding
GO:0009268	P	response to pH
GO:0009636	P	response to toxic substance
GO:0019842	F	vitamin binding
GO:0032502	P	developmental process
GO:0042360	P	vitamin E metabolic process
GO:0043325	F	phosphatidylinositol-3,4-bisphosphate binding
GO:0046909	P	obsolete intermembrane transport
GO:0051180	P	vitamin transport
GO:0051452	P	intracellular pH reduction
GO:0060548	P	negative regulation of cell death
GO:0090212	P	negative regulation of establishment of blood-brain barrier