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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1921 A_BomoASG_c12638_g1_i1
204bp
FPKM:4.26 TPM:3.26
1922 A_BomoASG_c12638_g2_i1
409bp
FPKM:1.62 TPM:1.24
1923 A_BomoASG_c1263_g1_i1
219bp
hypothetical_protein_COLAER_01802_[Collinsella_aerofaciens_ATCC_25986]
FPKM:0.00 TPM:0.00
1924 A_BomoASG_c1263_g1_i2
208bp
hypothetical_protein,_partial_[Arachis_diogoi]
FPKM:0.00 TPM:0.00
1925 A_BomoASG_c12640_g1_i1
334bp
FPKM:1.63 TPM:1.25
1926 A_BomoASG_c12641_g1_i1
444bp
FPKM:1.42 TPM:1.09
1927 A_BomoASG_c12642_g1_i1
268bp
FPKM:1.45 TPM:1.11
1928 A_BomoASG_c12642_g1_i2
546bp
FPKM:1.83 TPM:1.40
1929 A_BomoASG_c12643_g1_i1
637bp
 mago_nashi_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
GO:0071013 C catalytic step 2 spliceosome
FPKM:7.83 TPM:6.01
1930 A_BomoASG_c12643_g1_i2
721bp
 mago_nashi_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0000335 P negative regulation of transposition, DNA-mediated
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007267 P cell-cell signaling
GO:0007275 P multicellular organism development
GO:0007309 P oocyte axis specification
GO:0007315 P pole plasm assembly
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008104 P protein localization
GO:0008380 P RNA splicing
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0035145 C exon-exon junction complex
GO:0045451 P pole plasm oskar mRNA localization
GO:0045495 C pole plasm
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0046594 P maintenance of pole plasm mRNA location
GO:0048477 P oogenesis
GO:0051028 P mRNA transport
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:37.98 TPM:29.13
1931 A_BomoASG_c12644_g1_i1
704bp
 E3_ubiquitin-protein_ligase_UBR2_[Danaus_plexippus_plexippus]
GO:0000151 C ubiquitin ligase complex
GO:0000502 C proteasome complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0032007 P negative regulation of TOR signaling
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070728 F leucine binding
GO:0071233 P cellular response to leucine
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
FPKM:19.63 TPM:15.06
1932 A_BomoASG_c12646_g1_i1
526bp
FPKM:2.38 TPM:1.82
1933 A_BomoASG_c12647_g1_i1
244bp
 Gag-pol_polyprotein_[Operophtera_brumata]
FPKM:6.40 TPM:4.91
1934 A_BomoASG_c12649_g1_i1
437bp
FPKM:18.12 TPM:13.90
1935 A_BomoASG_c1264_g1_i1
250bp
FPKM:2.41 TPM:1.85
1936 A_BomoASG_c12652_g1_i1
219bp
 WD_repeat-containing_protein_19_isoform_X2_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0001701 P in utero embryonic development
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0008406 P gonad development
GO:0030030 P cell projection organization
GO:0030326 P embryonic limb morphogenesis
GO:0030991 C intraciliary transport particle A
GO:0031076 P embryonic camera-type eye development
GO:0031513 C non-motile cilium
GO:0031514 C motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035721 P intraciliary retrograde transport
GO:0042384 P cilium assembly
GO:0042471 P ear morphogenesis
GO:0042995 C cell projection
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0050877 P nervous system process
GO:0055123 P digestive system development
GO:0060271 P cilium assembly
GO:0060830 P ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061055 P myotome development
GO:0072372 C cilium
GO:0097542 C ciliary tip
FPKM:9.42 TPM:7.23
1937 A_BomoASG_c12653_g1_i1
242bp
FPKM:0.25 TPM:0.19
1938 A_BomoASG_c12653_g1_i2
671bp
FPKM:2.12 TPM:1.63
1939 A_BomoASG_c12656_g1_i1
284bp
FPKM:2.70 TPM:2.07
1940 A_BomoASG_c12657_g1_i1
205bp
 FH1/FH2_domain-containing_protein_3_[Bombyx_mori]
FPKM:1.05 TPM:0.80
1941 A_BomoASG_c12659_g1_i1
581bp
 cell_cycle_checkpoint_kinase_2_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0001302 P obsolete replicative cell aging
GO:0001934 P positive regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0006975 P DNA damage induced protein phosphorylation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0010332 P response to gamma radiation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0019901 F protein kinase binding
GO:0031625 F ubiquitin protein ligase binding
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042176 P regulation of protein catabolic process
GO:0042770 P signal transduction in response to DNA damage
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044257 P cellular protein catabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0050821 P protein stabilization
GO:0051301 P cell division
GO:0071157 P regulation of cell cycle
GO:0072428 P mitotic intra-S DNA damage checkpoint signaling
GO:0090307 P mitotic spindle assembly
GO:1902520 P response to doxorubicin
GO:1903926 P cellular response to bisphenol A
GO:2000002 P negative regulation of DNA damage checkpoint
GO:2000210 P positive regulation of anoikis
FPKM:2.76 TPM:2.12
1942 A_BomoASG_c12660_g1_i1
358bp
FPKM:6.93 TPM:5.31
1943 A_BomoASG_c12661_g1_i1
629bp
FPKM:2.24 TPM:1.71
1944 A_BomoASG_c12662_g1_i1
419bp
FPKM:7.56 TPM:5.80
1945 A_BomoASG_c12663_g1_i1
261bp
FPKM:37.49 TPM:28.76
1946 A_BomoASG_c12664_g1_i1
241bp
 uncharacterized_protein_LOC101746073_[Bombyx_mori]
FPKM:1.32 TPM:1.01
1947 A_BomoASG_c12666_g1_i1
299bp
FPKM:1.21 TPM:0.93
1948 A_BomoASG_c12667_g1_i1
889bp
 uncharacterized_protein_LOC692928_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005773 C vacuole
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006624 P vacuolar protein processing
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:20.30 TPM:15.57
1949 A_BomoASG_c12668_g1_i1
820bp
 vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:2.22 TPM:1.70
1950 A_BomoASG_c12669_g1_i1
236bp
 endoplasmic_reticulum_metallopeptidase_1_isoform_X2_[Bombyx_mori]
FPKM:2.79 TPM:2.14
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