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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1621 A_BomoASG_c12324_g1_i1
1465bp
 eukaryotic_translation_initiation_factor_4_gamma_2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0016020 C membrane
GO:0016281 C eukaryotic translation initiation factor 4F complex
GO:0044822 F RNA binding
FPKM:32.29 TPM:24.77
1622 A_BomoASG_c12325_g1_i1
1558bp
 cAMP-regulated_phosphoprotein_19_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0004864 F protein phosphatase inhibitor activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0019212 F phosphatase inhibitor activity
GO:0019901 F protein kinase binding
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0043086 P negative regulation of catalytic activity
GO:0051301 P cell division
GO:0051721 F protein phosphatase 2A binding
FPKM:45.94 TPM:35.24
1623 A_BomoASG_c12326_g1_i1
470bp
FPKM:2.99 TPM:2.29
1624 A_BomoASG_c12328_g1_i1
689bp
 heparanase-like_protein_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005975 P carbohydrate metabolic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008150 P biological_process
GO:0008284 P positive regulation of cell population proliferation
GO:0016020 C membrane
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0030198 P extracellular matrix organization
GO:0030305 F heparanase activity
GO:0043395 F heparan sulfate proteoglycan binding
FPKM:6.18 TPM:4.74
1625 A_BomoASG_c12329_g1_i1
317bp
 ATP-binding_cassette_sub-family_G_member_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010888 P negative regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0055037 C recycling endosome
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
FPKM:1.08 TPM:0.83
1626 A_BomoASG_c1232_g1_i1
214bp
FPKM:0.92 TPM:0.70
1627 A_BomoASG_c12330_g1_i1
2016bp
 ribosomal_protein_S5_[Bombyx_mori]
GO:0000028 P ribosomal small subunit assembly
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0005840 C ribosome
GO:0005925 C focal adhesion
GO:0006364 P rRNA processing
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006450 P regulation of translational fidelity
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0015935 C small ribosomal subunit
GO:0016020 C membrane
GO:0019083 P viral transcription
GO:0019843 F rRNA binding
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:43.18 TPM:33.12
1628 A_BomoASG_c12330_g1_i2
1935bp
 ribosomal_protein_S5_[Bombyx_mori]
GO:0000028 P ribosomal small subunit assembly
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0005840 C ribosome
GO:0005925 C focal adhesion
GO:0006364 P rRNA processing
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006450 P regulation of translational fidelity
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0015935 C small ribosomal subunit
GO:0016020 C membrane
GO:0019083 P viral transcription
GO:0019843 F rRNA binding
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:386.50 TPM:296.46
1629 A_BomoASG_c12331_g1_i1
305bp
FPKM:3.11 TPM:2.39
1630 A_BomoASG_c12333_g1_i1
336bp
FPKM:4.20 TPM:3.22
1631 A_BomoASG_c12334_g1_i1
2607bp
 peroxisomal_multifunctional_enzyme_type_2_[Bombyx_mori]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0001649 P osteoblast differentiation
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005102 F signaling receptor binding
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005782 C peroxisomal matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006699 P bile acid biosynthetic process
GO:0008152 P metabolic process
GO:0008209 P androgen metabolic process
GO:0008210 P estrogen metabolic process
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016508 F long-chain-enoyl-CoA hydratase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016829 F lyase activity
GO:0016853 F isomerase activity
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0033989 F 3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity
GO:0036109 P alpha-linolenic acid metabolic process
GO:0036111 P very long-chain fatty-acyl-CoA metabolic process
GO:0036112 P medium-chain fatty-acyl-CoA metabolic process
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0044594 F 17-beta-hydroxysteroid dehydrogenase (NAD+) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0060009 P Sertoli cell development
FPKM:64.76 TPM:49.68
1632 A_BomoASG_c12335_g1_i1
4513bp
 nitric_oxide_synthase_[Bombyx_mori]
GO:0004517 F nitric-oxide synthase activity
GO:0005506 F iron ion binding
GO:0005516 F calmodulin binding
GO:0006809 P nitric oxide biosynthetic process
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0046872 F metal ion binding
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:38.83 TPM:29.79
1633 A_BomoASG_c12336_g1_i1
3176bp
 coatomer_protein_complex_subunit_beta_2_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005198 F structural molecule activity
GO:0005215 F transporter activity
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0010883 P regulation of lipid storage
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
FPKM:11.97 TPM:9.18
1634 A_BomoASG_c12336_g1_i2
3164bp
 coatomer_protein_complex_subunit_beta_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005198 F structural molecule activity
GO:0005215 F transporter activity
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0010883 P regulation of lipid storage
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
FPKM:57.32 TPM:43.97
1635 A_BomoASG_c12337_g1_i1
463bp
FPKM:8.59 TPM:6.59
1636 A_BomoASG_c12338_g1_i1
278bp
FPKM:6.13 TPM:4.70
1637 A_BomoASG_c1233_g1_i1
305bp
FPKM:5.05 TPM:3.88
1638 A_BomoASG_c12340_g1_i1
477bp
 Myeloma-overexpressed_gene_2_protein-like_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:29.16 TPM:22.36
1639 A_BomoASG_c12340_g1_i2
516bp
 Myeloma-overexpressed_gene_2_protein-like_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:82.15 TPM:63.01
1640 A_BomoASG_c12341_g1_i1
312bp
FPKM:0.74 TPM:0.57
1641 A_BomoASG_c12341_g2_i1
463bp
FPKM:1.34 TPM:1.02
1642 A_BomoASG_c12342_g1_i1
1746bp
 serine/threonine-protein_phosphatase_4_regulatory_subunit_2_[Bombyx_mori]
GO:0000278 P mitotic cell cycle
GO:0000775 C chromosome, centromeric region
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0019888 F protein phosphatase regulator activity
GO:0022008 P neurogenesis
GO:0030289 C protein phosphatase 4 complex
GO:0035304 P regulation of protein dephosphorylation
GO:0050790 P regulation of catalytic activity
FPKM:9.84 TPM:7.55
1643 A_BomoASG_c12342_g1_i2
1699bp
 serine/threonine-protein_phosphatase_4_regulatory_subunit_2_[Bombyx_mori]
GO:0000278 P mitotic cell cycle
GO:0000775 C chromosome, centromeric region
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0019888 F protein phosphatase regulator activity
GO:0022008 P neurogenesis
GO:0030289 C protein phosphatase 4 complex
GO:0035304 P regulation of protein dephosphorylation
GO:0050790 P regulation of catalytic activity
FPKM:32.28 TPM:24.76
1644 A_BomoASG_c12343_g1_i1
363bp
FPKM:3.38 TPM:2.59
1645 A_BomoASG_c12344_g1_i1
459bp
 hypothetical_protein_[Acinetobacter_baumannii]
FPKM:8.70 TPM:6.67
1646 A_BomoASG_c12345_g1_i1
208bp
FPKM:3.00 TPM:2.30
1647 A_BomoASG_c12346_g1_i1
290bp
FPKM:1.72 TPM:1.32
1648 A_BomoASG_c12348_g1_i1
1288bp
 cytochrome_b_(mitochondrion)_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006122 P mitochondrial electron transport, ubiquinol to cytochrome c
GO:0008121 F ubiquinol-cytochrome-c reductase activity
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0022904 P respiratory electron transport chain
GO:0045275 C respiratory chain complex III
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
GO:1902600 P proton transmembrane transport
FPKM:443.66 TPM:340.31
1649 A_BomoASG_c12349_g1_i1
2933bp
 LETM1_and_EF-hand_domain-containing_protein_1,_mitochondrial_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043022 F ribosome binding
FPKM:32.32 TPM:24.79
1650 A_BomoASG_c1234_g1_i1
352bp
FPKM:2.38 TPM:1.82
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