SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/58621
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1171 A_BomoASG_c1176_g1_i1
707bp
 transcription_initiation_factor_TFIID_subunit_12_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0004402 F histone acetyltransferase activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007221 P positive regulation of transcription of Notch receptor target
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0042803 F protein homodimerization activity
GO:0043966 P histone H3 acetylation
GO:0046982 F protein heterodimerization activity
GO:0051123 P RNA polymerase II preinitiation complex assembly
FPKM:48.76 TPM:37.40
1172 A_BomoASG_c11771_g1_i1
359bp
FPKM:2.87 TPM:2.20
1173 A_BomoASG_c11772_g1_i1
570bp
FPKM:4.68 TPM:3.59
1174 A_BomoASG_c11773_g1_i1
386bp
 A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_7_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0009986 C cell surface
GO:0016787 F hydrolase activity
GO:0031012 C extracellular matrix
GO:0032331 P negative regulation of chondrocyte differentiation
GO:0046872 F metal ion binding
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0071347 P cellular response to interleukin-1
GO:0071356 P cellular response to tumor necrosis factor
GO:0071773 P cellular response to BMP stimulus
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
FPKM:1.52 TPM:1.17
1175 A_BomoASG_c11776_g1_i1
542bp
 LSM_Sm-like_protein_family_member_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030629 F U6 snRNA 3'-end binding
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1990726 C Lsm1-7-Pat1 complex
FPKM:31.01 TPM:23.79
1176 A_BomoASG_c11777_g1_i1
283bp
FPKM:4.99 TPM:3.83
1177 A_BomoASG_c11779_g1_i1
354bp
 leucine-rich_repeat-containing_protein_70_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045773 P positive regulation of axon extension
FPKM:1.30 TPM:0.99
1178 A_BomoASG_c11779_g1_i2
397bp
 leucine-rich_repeat-containing_protein_70_[Bombyx_mori]
GO:0007409 P axonogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.36 TPM:1.04
1179 A_BomoASG_c11780_g1_i1
302bp
FPKM:1.98 TPM:1.52
1180 A_BomoASG_c11781_g1_i1
291bp
FPKM:1.71 TPM:1.31
1181 A_BomoASG_c11783_g1_i1
395bp
FPKM:2.20 TPM:1.69
1182 A_BomoASG_c11783_g1_i2
215bp
FPKM:0.00 TPM:0.00
1183 A_BomoASG_c11784_g1_i1
291bp
conjugal_transfer_protein_TraG,_partial_[Pseudomonas_aeruginosa]
FPKM:1.28 TPM:0.98
1184 A_BomoASG_c11787_g1_i1
482bp
 peroxidase_isoform_X2_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005506 F iron ion binding
GO:0005576 C extracellular region
GO:0006909 P phagocytosis
GO:0006979 P response to oxidative stress
GO:0007306 P eggshell chorion assembly
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0022008 P neurogenesis
GO:0042600 C egg chorion
GO:0042744 P hydrogen peroxide catabolic process
GO:0045471 P response to ethanol
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:2.34 TPM:1.79
1185 A_BomoASG_c11788_g1_i1
418bp
FPKM:2.23 TPM:1.71
1186 A_BomoASG_c11790_g1_i1
208bp
FPKM:3.00 TPM:2.30
1187 A_BomoASG_c11791_g1_i1
221bp
FPKM:6.68 TPM:5.12
1188 A_BomoASG_c11792_g1_i1
397bp
FPKM:2.42 TPM:1.86
1189 A_BomoASG_c11794_g1_i1
589bp
FPKM:4.61 TPM:3.54
1190 A_BomoASG_c11795_g1_i1
260bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
FPKM:2.19 TPM:1.68
1191 A_BomoASG_c11797_g1_i1
770bp
FPKM:4.69 TPM:3.60
1192 A_BomoASG_c11798_g1_i1
264bp
FPKM:5.29 TPM:4.06
1193 A_BomoASG_c11799_g1_i1
355bp
FPKM:0.55 TPM:0.42
1194 A_BomoASG_c11799_g1_i2
654bp
FPKM:2.73 TPM:2.09
1195 A_BomoASG_c1179_g1_i1
727bp
FPKM:2.78 TPM:2.13
1196 A_BomoASG_c117_g1_i1
283bp
FPKM:20.41 TPM:15.66
1197 A_BomoASG_c11800_g1_i1
306bp
 putative_piggybac_transposable_element-derived_[Operophtera_brumata]
FPKM:2.70 TPM:2.07
1198 A_BomoASG_c11802_g1_i1
279bp
FPKM:1.40 TPM:1.08
1199 A_BomoASG_c11803_g1_i1
204bp
 kinesin-like_protein_KIF20B_[Bombyx_mori]
FPKM:3.19 TPM:2.45
1200 A_BomoASG_c11805_g1_i1
267bp
FPKM:4.64 TPM:3.56
previous next from show/58621

- SilkBase 1999-2023 -