SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/52479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
151 A_SariMG_comp104793_c0_seq1
702bp
phosphoglycerate_kinase_[Neisseria_wadsworthii]
FPKM:1.00 TPM:1.00
152 A_SariMG_comp1048186_c0_seq1
278bp
glycosyl_transferase_[Pontibacter_sp._BAB1700]
FPKM:0.54 TPM:0.54
153 A_SariMG_comp104913_c0_seq1
342bp
FPKM:1.34 TPM:1.34
154 A_SariMG_comp104919_c0_seq1
330bp
FPKM:0.52 TPM:0.52
155 A_SariMG_comp104956_c0_seq1
1115bp
cyclin_dependent_kinase_5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005176 F ErbB-2 class receptor binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007399 P nervous system development
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030027 C lamellipodium
GO:0030054 C cell junction
GO:0030182 P neuron differentiation
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030549 F acetylcholine receptor activator activity
GO:0031175 P neuron projection development
GO:0031594 C neuromuscular junction
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0043125 F ErbB-3 class receptor binding
GO:0043204 C perikaryon
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0048511 P rhythmic process
GO:0050321 F tau-protein kinase activity
GO:0051301 P cell division
GO:0061001 P regulation of dendritic spine morphogenesis
GO:2000273 P positive regulation of signaling receptor activity
FPKM:3.30 TPM:3.31
156 A_SariMG_comp104972_c0_seq1
311bp
FPKM:2.74 TPM:2.74
157 A_SariMG_comp10498_c0_seq1
220bp
PREDICTED:_uncharacterized_protein_LOC101745836_[Bombyx_mori]
FPKM:0.93 TPM:0.93
158 A_SariMG_comp105058_c0_seq1
322bp
FPKM:5.00 TPM:5.02
159 A_SariMG_comp105132_c0_seq1
1050bp
PREDICTED:_dnaJ_(Hsp40)_homolog_10_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.31 TPM:2.31
160 A_SariMG_comp105250_c0_seq1
269bp
PREDICTED:_uncharacterized_protein_LOC105385458_[Plutella_xylostella]
FPKM:3.45 TPM:3.46
161 A_SariMG_comp105401_c0_seq1
819bp
FPKM:2.59 TPM:2.60
162 A_SariMG_comp105427_c0_seq1
1107bp
PREDICTED:_protein_C21orf2_isoform_X3_[Amyelois_transitella]
FPKM:3.99 TPM:4.00
163 A_SariMG_comp105438_c0_seq1
489bp
FPKM:4.21 TPM:4.22
164 A_SariMG_comp105473_c0_seq1
581bp
FPKM:2.11 TPM:2.11
165 A_SariMG_comp105484_c0_seq1
1220bp
hypothetical_protein_RR48_10197_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0051321 P meiotic cell cycle
FPKM:3.46 TPM:3.47
166 A_SariMG_comp1055054_c0_seq1
262bp
FPKM:0.61 TPM:0.61
167 A_SariMG_comp105515_c0_seq1
379bp
cecropin-like_protein_[Antheraea_mylitta]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0042742 P defense response to bacterium
GO:0045087 P innate immune response
FPKM:4.83 TPM:4.84
168 A_SariMG_comp105549_c0_seq1
581bp
FPKM:4.88 TPM:4.90
169 A_SariMG_comp105553_c0_seq1
214bp
FPKM:5.35 TPM:5.36
170 A_SariMG_comp105602_c0_seq1
537bp
PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Dufourea_novaeangliae]
FPKM:3.58 TPM:3.59
171 A_SariMG_comp105607_c0_seq1
593bp
target_of_rapamycin_kinase_(TOR)_kinase_3_putative_(TOR3)_[Leptomonas_seymouri]
FPKM:3.56 TPM:3.57
172 A_SariMG_comp105628_c0_seq1
1505bp
PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
FPKM:2.27 TPM:2.28
173 A_SariMG_comp10571_c0_seq1
289bp
PREDICTED:_transcription_factor_SPT20_homolog_[Bombyx_mori]
FPKM:0.83 TPM:0.83
174 A_SariMG_comp1057590_c0_seq1
215bp
FPKM:0.33 TPM:0.33
175 A_SariMG_comp105772_c0_seq1
355bp
FPKM:5.60 TPM:5.62
176 A_SariMG_comp105805_c0_seq1
302bp
glycoprotein_precursor_[Wuhan_Fly_Virus_1]
FPKM:0.61 TPM:0.61
177 A_SariMG_comp105872_c0_seq1
337bp
FPKM:3.75 TPM:3.76
178 A_SariMG_comp105883_c0_seq1
319bp
FPKM:4.68 TPM:4.69
179 A_SariMG_comp105885_c0_seq1
273bp
FPKM:3.53 TPM:3.54
180 A_SariMG_comp105940_c0_seq1
1297bp
PREDICTED:_myotubularin-related_protein_5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005774 C vacuolar membrane
GO:0016020 C membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0019208 F phosphatase regulator activity
GO:0019902 F phosphatase binding
GO:0035091 F phosphatidylinositol binding
GO:0042552 P myelination
GO:0042803 F protein homodimerization activity
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0051262 P protein tetramerization
FPKM:3.56 TPM:3.57
previous next from show/52479

- SilkBase 1999-2023 -