SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/144953
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2941 A_BomoN4EE_TR10270_c0_g1_i1
294bp
 PREDICTED:_homeobox_protein_Mohawk_isoform_X1_[Bombyx_mori]
FPKM:1.10 TPM:1.47
2942 A_BomoN4EE_TR10271_c0_g1_i1
349bp
 PREDICTED:_ubiquitin-like-conjugating_enzyme_ATG3_[Plutella_xylostella]
GO:0000045 P autophagosome assembly
GO:0000153 C cytoplasmic ubiquitin ligase complex
GO:0000422 P autophagy of mitochondrion
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016874 F ligase activity
GO:0019776 F Atg8 ligase activity
GO:0019777 F Atg12 transferase activity
GO:0043653 P mitochondrial fragmentation involved in apoptotic process
GO:0044804 P autophagy of nucleus
FPKM:0.55 TPM:0.74
2943 A_BomoN4EE_TR10272_c0_g1_i1
292bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_liprin-alpha-1_[Bombyx_mori]
FPKM:0.56 TPM:0.75
2944 A_BomoN4EE_TR10273_c0_g1_i1
344bp
FPKM:0.76 TPM:1.01
2945 A_BomoN4EE_TR10274_c0_g1_i1
466bp
FPKM:2.23 TPM:2.97
2946 A_BomoN4EE_TR10275_c0_g1_i1
298bp
 hypothetical_protein_O988_08345_[Pseudogymnoascus_sp._VKM_F-3808]
FPKM:0.00 TPM:0.00
2947 A_BomoN4EE_TR10276_c0_g1_i1
336bp
FPKM:1.20 TPM:1.60
2948 A_BomoN4EE_TR10277_c0_g1_i1
364bp
FPKM:0.17 TPM:0.22
2949 A_BomoN4EE_TR10278_c0_g1_i1
245bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_chaoptin-like_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0007155 P cell adhesion
FPKM:0.00 TPM:0.00
2950 A_BomoN4EE_TR10279_c0_g1_i1
335bp
FPKM:0.40 TPM:0.54
2951 A_BomoN4EE_TR1027_c0_g1_i1
736bp
FPKM:0.27 TPM:0.36
2952 A_BomoN4EE_TR10280_c0_g1_i1
310bp
FPKM:0.72 TPM:0.96
2953 A_BomoN4EE_TR10281_c0_g1_i1
224bp
FPKM:0.64 TPM:0.85
2954 A_BomoN4EE_TR10282_c0_g1_i1
736bp
 trehalose-phosphatase_[Sphingomonas_hengshuiensis]
FPKM:0.80 TPM:1.07
2955 A_BomoN4EE_TR10283_c0_g1_i1
408bp
FPKM:0.54 TPM:0.72
2956 A_BomoN4EE_TR10284_c1_g1_i1
617bp
 PREDICTED:_putative_ammonium_transporter_2_[Papilio_machaon]
FPKM:1.09 TPM:1.46
2957 A_BomoN4EE_TR10285_c0_g1_i1
480bp
 Pseudouridine_synthase,_partial_[Thermotoga_sp._50_64]
FPKM:0.00 TPM:0.00
2958 A_BomoN4EE_TR10286_c0_g1_i1
275bp
 PREDICTED:_inner_centromere_protein_A_[Bombyx_mori]
FPKM:0.33 TPM:0.44
2959 A_BomoN4EE_TR10287_c0_g1_i1
345bp
FPKM:0.00 TPM:0.00
2960 A_BomoN4EE_TR10288_c0_g1_i1
309bp
 MazG_family_protein_[Bacillus_flexus]
FPKM:0.24 TPM:0.32
2961 A_BomoN4EE_TR10289_c0_g1_i1
289bp
 PREDICTED:_cyclic_nucleotide-gated_cation_channel_subunit_A-like_[Bombyx_mori]
FPKM:0.58 TPM:0.77
2962 A_BomoN4EE_TR1028_c0_g1_i1
376bp
 hypothetical_protein_MTR_5g005040_[Medicago_truncatula]
FPKM:0.95 TPM:1.26
2963 A_BomoN4EE_TR10290_c0_g1_i1
271bp
FPKM:0.69 TPM:0.92
2964 A_BomoN4EE_TR10291_c0_g1_i1
235bp
 hypothetical_protein_[Paenibacillus_sabinae]
FPKM:0.54 TPM:0.72
2965 A_BomoN4EE_TR10292_c0_g1_i1
250bp
 hypothetical_protein_[Endozoicomonas_numazuensis]
FPKM:0.44 TPM:0.58
2966 A_BomoN4EE_TR10293_c0_g1_i1
447bp
FPKM:1.37 TPM:1.82
2967 A_BomoN4EE_TR10294_c0_g1_i1
320bp
FPKM:0.22 TPM:0.30
2968 A_BomoN4EE_TR10295_c0_g1_i1
461bp
 hypothetical_protein_HMPREF1508_0873_[Shuttleworthia_sp._MSX8B]
FPKM:3.46 TPM:4.60
2969 A_BomoN4EE_TR10296_c0_g1_i1
248bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2970 A_BomoN4EE_TR10297_c0_g1_i1
391bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:0.44 TPM:0.58
previous next from show/144953

- SilkBase 1999-2023 -