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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2221 A_BomoMG_comp17782_c0_seq1
500bp
 PREDICTED:_autophagy-related_protein_2_homolog_A-like_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0000422 P autophagy of mitochondrion
GO:0005515 F protein binding
GO:0005811 C lipid droplet
GO:0006914 P autophagy
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0034045 C phagophore assembly site membrane
GO:0044804 P autophagy of nucleus
FPKM:2.84 TPM:2.25
2222 A_BomoMG_comp17783_c0_seq1
282bp
FPKM:3.59 TPM:2.84
2223 A_BomoMG_comp177841_c0_seq1
692bp
FPKM:3.95 TPM:3.12
2224 A_BomoMG_comp17786_c0_seq1
327bp
 hypothetical_protein_LOTGIDRAFT_168383_[Lottia_gigantea]
FPKM:3.31 TPM:2.62
2225 A_BomoMG_comp17787_c0_seq1
1135bp
 PREDICTED:_protein_phosphatase_1_regulatory_subunit_21_[Bombyx_mori]
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0019902 F phosphatase binding
FPKM:2.22 TPM:1.75
2226 A_BomoMG_comp177893_c0_seq1
871bp
 PREDICTED:_RUN_and_FYVE_domain-containing_protein_2_isoform_X5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0046872 F metal ion binding
FPKM:3.28 TPM:2.59
2227 A_BomoMG_comp17789_c0_seq1
345bp
FPKM:3.20 TPM:2.53
2228 A_BomoMG_comp17789_c1_seq1
758bp
FPKM:1.94 TPM:1.54
2229 A_BomoMG_comp17790_c0_seq1
368bp
FPKM:2.02 TPM:1.60
2230 A_BomoMG_comp17791_c0_seq1
477bp
 Prpk-binding_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0019901 F protein kinase binding
FPKM:2.25 TPM:1.78
2231 A_BomoMG_comp17792_c0_seq1
567bp
FPKM:2.12 TPM:1.68
2232 A_BomoMG_comp177943_c0_seq1
1711bp
 PREDICTED:_zinc_finger_protein_729_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000278 P mitotic cell cycle
GO:0000976 F transcription cis-regulatory region binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051567 P histone H3-K9 methylation
GO:0070491 F DNA-binding transcription factor binding
FPKM:2.28 TPM:1.80
2233 A_BomoMG_comp17794_c0_seq1
411bp
 atypical_protein_kinase_C_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004697 F protein kinase C activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0034351 P negative regulation of glial cell apoptotic process
GO:0035556 P intracellular signal transduction
GO:0043524 P negative regulation of neuron apoptotic process
GO:0046872 F metal ion binding
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0060252 P positive regulation of glial cell proliferation
GO:2000353 P positive regulation of endothelial cell apoptotic process
FPKM:2.40 TPM:1.89
2234 A_BomoMG_comp177977_c0_seq1
258bp
FPKM:6.39 TPM:5.05
2235 A_BomoMG_comp17800_c0_seq1
1205bp
 PREDICTED:_junctophilin-1_isoform_X1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0007612 P learning
GO:0007613 P memory
GO:0015278 F calcium-release channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030314 C junctional membrane complex
GO:0035640 P exploration behavior
GO:0040011 P locomotion
GO:0048168 P regulation of neuronal synaptic plasticity
GO:0050885 P neuromuscular process controlling balance
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0060314 P regulation of ryanodine-sensitive calcium-release channel activity
FPKM:0.46 TPM:0.37
2236 A_BomoMG_comp17800_c0_seq2
1376bp
 PREDICTED:_junctophilin-1_isoform_X1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0007612 P learning
GO:0007613 P memory
GO:0015278 F calcium-release channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030314 C junctional membrane complex
GO:0035640 P exploration behavior
GO:0040011 P locomotion
GO:0048168 P regulation of neuronal synaptic plasticity
GO:0050885 P neuromuscular process controlling balance
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0060314 P regulation of ryanodine-sensitive calcium-release channel activity
FPKM:1.89 TPM:1.50
2237 A_BomoMG_comp178023_c0_seq1
356bp
FPKM:5.52 TPM:4.36
2238 A_BomoMG_comp178029_c0_seq1
863bp
FPKM:3.37 TPM:2.66
2239 A_BomoMG_comp17802_c0_seq1
1041bp
 PREDICTED:_U3_small_nucleolar_RNA-interacting_protein_2_[Amyelois_transitella]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0031428 C box C/D RNP complex
GO:0032040 C small-subunit processome
GO:0034511 F U3 snoRNA binding
GO:0044822 F RNA binding
FPKM:2.24 TPM:1.77
2240 A_BomoMG_comp17803_c0_seq1
313bp
FPKM:3.59 TPM:2.84
2241 A_BomoMG_comp178042_c0_seq1
333bp
FPKM:5.01 TPM:3.96
2242 A_BomoMG_comp178043_c0_seq1
542bp
 PREDICTED:_myotubularin-related_protein_5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005774 C vacuolar membrane
GO:0016020 C membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0019208 F phosphatase regulator activity
GO:0019902 F phosphatase binding
GO:0035091 F phosphatidylinositol binding
GO:0042552 P myelination
GO:0042803 F protein homodimerization activity
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0051262 P protein tetramerization
FPKM:3.01 TPM:2.38
2243 A_BomoMG_comp17804_c0_seq1
1078bp
 PREDICTED:_zinc_finger_BED_domain-containing_protein_1-like_[Acyrthosiphon_pisum]
GO:0000228 C nuclear chromosome
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004803 F transposase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0015629 C actin cytoskeleton
GO:0046872 F metal ion binding
GO:0046983 F protein dimerization activity
FPKM:2.47 TPM:1.95
2244 A_BomoMG_comp178057_c0_seq1
1003bp
FPKM:3.12 TPM:2.47
2245 A_BomoMG_comp17806_c0_seq1
531bp
FPKM:3.39 TPM:2.68
2246 A_BomoMG_comp178079_c0_seq1
1288bp
 PREDICTED:_isoleucine--tRNA_ligase,_mitochondrial_isoform_X1_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004822 F isoleucine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006428 P isoleucyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0016874 F ligase activity
FPKM:2.80 TPM:2.21
2247 A_BomoMG_comp17807_c0_seq1
498bp
FPKM:2.33 TPM:1.84
2248 A_BomoMG_comp17808_c0_seq1
475bp
 PREDICTED:_tyrosine-protein_phosphatase_non-receptor_type_4_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005938 C cell cortex
GO:0008092 F cytoskeletal protein binding
GO:0019898 C extrinsic component of membrane
GO:0030866 P cortical actin cytoskeleton organization
FPKM:3.29 TPM:2.60
2249 A_BomoMG_comp17809_c0_seq1
839bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_A-kinase_anchor_protein_13_[Bombyx_mori]
FPKM:1.82 TPM:1.44
2250 A_BomoMG_comp17809_c0_seq2
741bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_A-kinase_anchor_protein_13_[Bombyx_mori]
FPKM:0.00 TPM:0.00
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