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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3001 A_BomoFB_comp10486_c3_seq6
3349bp
 PREDICTED:_ATP-binding_cassette_sub-family_G_member_1-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010888 P negative regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0055037 C recycling endosome
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
FPKM:1.12 TPM:1.23
3002 A_BomoFB_comp10486_c3_seq7
768bp
FPKM:0.60 TPM:0.66
3003 A_BomoFB_comp10486_c3_seq8
2501bp
 PREDICTED:_ATP-binding_cassette_sub-family_G_member_1-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010888 P negative regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0055037 C recycling endosome
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
FPKM:0.00 TPM:0.00
3004 A_BomoFB_comp10486_c3_seq9
379bp
 PREDICTED:_TMV_resistance_protein_N-like_[Pyrus_x_bretschneideri]
FPKM:2.77 TPM:3.03
3005 A_BomoFB_comp10486_c4_seq1
474bp
FPKM:3.36 TPM:3.68
3006 A_BomoFB_comp10487_c1_seq1
1659bp
 AF461149_1_transposase_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
FPKM:14.20 TPM:15.56
3007 A_BomoFB_comp10487_c1_seq2
1755bp
 AF461149_1_transposase_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
FPKM:52.54 TPM:57.57
3008 A_BomoFB_comp10488_c0_seq1
3080bp
 hypothetical_protein_KGM_14811_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0001816 P cytokine production
GO:0002376 P immune system process
GO:0002446 P neutrophil mediated immunity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005149 F interleukin-1 receptor binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019221 P cytokine-mediated signaling pathway
GO:0035556 P intracellular signal transduction
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045087 P innate immune response
GO:1990266 P neutrophil migration
FPKM:6.37 TPM:6.98
3009 A_BomoFB_comp10488_c0_seq2
1147bp
 PREDICTED:_ankyrin_repeat_and_BTB/POZ_domain-containing_protein_BTBD11_isoform_X4_[Bombyx_mori]
FPKM:1.71 TPM:1.87
3010 A_BomoFB_comp10488_c0_seq3
204bp
 PREDICTED:_ankyrin_repeat_and_BTB/POZ_domain-containing_protein_BTBD11_isoform_X4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0046982 F protein heterodimerization activity
GO:0097237 P cellular response to toxic substance
FPKM:6.12 TPM:6.70
3011 A_BomoFB_comp104890_c0_seq1
814bp
FPKM:2.15 TPM:2.36
3012 A_BomoFB_comp104894_c0_seq1
307bp
FPKM:5.21 TPM:5.70
3013 A_BomoFB_comp10489_c0_seq1
2625bp
 PREDICTED:_uncharacterized_protein_LOC106142857_[Amyelois_transitella]
FPKM:4.53 TPM:4.96
3014 A_BomoFB_comp10489_c0_seq2
2779bp
 PREDICTED:_uncharacterized_protein_LOC106142857_[Amyelois_transitella]
FPKM:30.80 TPM:33.74
3015 A_BomoFB_comp104900_c0_seq1
748bp
 PREDICTED:_tRNA-splicing_endonuclease_subunit_Sen2_isoform_X2_[Papilio_machaon]
FPKM:2.11 TPM:2.31
3016 A_BomoFB_comp10490_c0_seq1
488bp
 hypothetical_protein_RR48_05936,_partial_[Papilio_machaon]
FPKM:2.32 TPM:2.54
3017 A_BomoFB_comp10490_c0_seq2
418bp
FPKM:3.02 TPM:3.31
3018 A_BomoFB_comp10490_c0_seq3
3815bp
 timeless_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
FPKM:5.38 TPM:5.89
3019 A_BomoFB_comp10490_c0_seq4
320bp
FPKM:1.54 TPM:1.69
3020 A_BomoFB_comp10490_c0_seq5
551bp
 AF132032_1_timeless_[Antheraea_pernyi]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003053 P circadian regulation of heart rate
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006606 P protein import into nucleus
GO:0007617 P mating behavior
GO:0007620 P copulation
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0008134 F transcription factor binding
GO:0009648 P photoperiodism
GO:0009649 P entrainment of circadian clock
GO:0030431 P sleep
GO:0042306 P regulation of protein import into nucleus
GO:0042749 P regulation of circadian sleep/wake cycle
GO:0043234 C protein-containing complex
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0046957 P negative phototaxis
GO:0046982 F protein heterodimerization activity
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
GO:0048512 P circadian behavior
GO:0050764 P regulation of phagocytosis
GO:0050766 P positive regulation of phagocytosis
GO:0060086 P circadian temperature homeostasis
GO:0071482 P cellular response to light stimulus
GO:2000678 P negative regulation of transcription regulatory region DNA binding
FPKM:0.00 TPM:0.00
3021 A_BomoFB_comp10490_c0_seq6
597bp
 hypothetical_protein_RR48_05936,_partial_[Papilio_machaon]
FPKM:0.00 TPM:0.00
3022 A_BomoFB_comp10490_c0_seq7
540bp
 hypothetical_protein_RR48_05936,_partial_[Papilio_machaon]
FPKM:2.89 TPM:3.16
3023 A_BomoFB_comp10490_c0_seq8
3985bp
 timeless_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
FPKM:11.80 TPM:12.93
3024 A_BomoFB_comp104915_c0_seq1
2204bp
 PREDICTED:_mitogen-activated_protein_kinase_kinase_kinase_kinase_5_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000185 P obsolete activation of MAPKKK activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007254 P JNK cascade
GO:0008349 F MAP kinase kinase kinase kinase activity
GO:0009411 P response to UV
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0034612 P response to tumor necrosis factor
GO:0035556 P intracellular signal transduction
FPKM:3.30 TPM:3.62
3025 A_BomoFB_comp10491_c0_seq1
991bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
FPKM:1.08 TPM:1.18
3026 A_BomoFB_comp10491_c0_seq10
1305bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744003_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:7.39 TPM:8.09
3027 A_BomoFB_comp10491_c0_seq11
981bp
 PREDICTED:_bolA-like_protein_DDB_G0274169_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:10.31 TPM:11.29
3028 A_BomoFB_comp10491_c0_seq12
3981bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3029 A_BomoFB_comp10491_c0_seq13
3913bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:9.09 TPM:9.96
3030 A_BomoFB_comp10491_c0_seq14
537bp
 2,3-bisphosphoglycerate-independent_phosphoglycerate_mutase_[Pseudomonas_sp._GM21]
FPKM:3.83 TPM:4.20
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