SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2941 A_BomoFB_comp10485_c0_seq17
1227bp
 PREDICTED:_uncharacterized_protein_LOC100101190_isoform_X2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2942 A_BomoFB_comp10485_c0_seq18
1335bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2943 A_BomoFB_comp10485_c0_seq19
2027bp
 PREDICTED:_tetraspanin_E118_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:6.61 TPM:7.24
2944 A_BomoFB_comp10485_c0_seq2
864bp
 PREDICTED:_tetraspanin_E118_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:75.27 TPM:82.48
2945 A_BomoFB_comp10485_c0_seq3
810bp
 PREDICTED:_uncharacterized_protein_LOC100101190_isoform_X2_[Bombyx_mori]
FPKM:2.53 TPM:2.77
2946 A_BomoFB_comp10485_c0_seq4
1239bp
 PREDICTED:_uncharacterized_protein_LOC100101190_isoform_X2_[Bombyx_mori]
FPKM:2.03 TPM:2.22
2947 A_BomoFB_comp10485_c0_seq5
2294bp
 PREDICTED:_tetraspanin_E118_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.00 TPM:0.00
2948 A_BomoFB_comp10485_c0_seq6
400bp
FPKM:3.00 TPM:3.29
2949 A_BomoFB_comp10485_c0_seq7
822bp
 PREDICTED:_uncharacterized_protein_LOC100101190_isoform_X2_[Bombyx_mori]
FPKM:0.12 TPM:0.13
2950 A_BomoFB_comp10485_c0_seq8
898bp
 BnaC03g26940D_[Brassica_napus]
FPKM:0.61 TPM:0.66
2951 A_BomoFB_comp10485_c0_seq9
2282bp
 PREDICTED:_tetraspanin_E118_isoform_X1_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:0.00 TPM:0.00
2952 A_BomoFB_comp10485_c1_seq1
3037bp
 PREDICTED:_uncharacterized_protein_LOC101743491_isoform_X1_[Bombyx_mori]
FPKM:2.46 TPM:2.69
2953 A_BomoFB_comp10485_c1_seq2
2905bp
 PREDICTED:_uncharacterized_protein_LOC101743491_isoform_X1_[Bombyx_mori]
FPKM:3.63 TPM:3.98
2954 A_BomoFB_comp10485_c1_seq3
320bp
 PREDICTED:_uncharacterized_protein_LOC101743491_isoform_X1_[Bombyx_mori]
FPKM:9.10 TPM:9.97
2955 A_BomoFB_comp10485_c1_seq4
859bp
 PREDICTED:_uncharacterized_protein_LOC101743491_isoform_X1_[Bombyx_mori]
FPKM:6.39 TPM:7.00
2956 A_BomoFB_comp10485_c1_seq5
3019bp
 PREDICTED:_uncharacterized_protein_LOC101743491_isoform_X1_[Bombyx_mori]
FPKM:7.22 TPM:7.91
2957 A_BomoFB_comp10485_c1_seq6
810bp
 PREDICTED:_uncharacterized_protein_LOC101743491_isoform_X1_[Bombyx_mori]
FPKM:4.15 TPM:4.55
2958 A_BomoFB_comp10485_c1_seq7
2923bp
 PREDICTED:_uncharacterized_protein_LOC101743491_isoform_X1_[Bombyx_mori]
FPKM:1.32 TPM:1.45
2959 A_BomoFB_comp10485_c2_seq1
367bp
FPKM:0.29 TPM:0.32
2960 A_BomoFB_comp10486_c0_seq1
528bp
 olfactory_receptor_[Bombyx_mori]
FPKM:1.73 TPM:1.90
2961 A_BomoFB_comp10486_c0_seq2
323bp
 olfactory_receptor_[Bombyx_mori]
FPKM:3.47 TPM:3.80
2962 A_BomoFB_comp10486_c0_seq3
1103bp
 ring_finger_protein_5_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006914 P autophagy
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036503 P ERAD pathway
GO:0036513 C Derlin-1 retrotranslocation complex
GO:0044390 F ubiquitin-like protein conjugating enzyme binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:1904264 F ubiquitin protein ligase activity
FPKM:16.70 TPM:18.30
2963 A_BomoFB_comp10486_c1_seq1
1203bp
FPKM:2.45 TPM:2.68
2964 A_BomoFB_comp10486_c2_seq1
1045bp
FPKM:2.39 TPM:2.62
2965 A_BomoFB_comp10486_c3_seq1
860bp
FPKM:1.62 TPM:1.77
2966 A_BomoFB_comp10486_c3_seq10
1591bp
FPKM:3.41 TPM:3.73
2967 A_BomoFB_comp10486_c3_seq11
2339bp
 PREDICTED:_ATP-binding_cassette_sub-family_G_member_1-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010888 P negative regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0055037 C recycling endosome
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
FPKM:0.00 TPM:0.00
2968 A_BomoFB_comp10486_c3_seq12
749bp
FPKM:0.00 TPM:0.00
2969 A_BomoFB_comp10486_c3_seq13
1916bp
 cAMP-dependent_protein_kinase_R2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001932 P regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005952 C cAMP-dependent protein kinase complex
GO:0007411 P axon guidance
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008603 F cAMP-dependent protein kinase regulator activity
GO:0030552 F cAMP binding
GO:0045475 P locomotor rhythm
GO:0045859 P regulation of protein kinase activity
GO:0048148 P behavioral response to cocaine
GO:0048149 P behavioral response to ethanol
GO:0048511 P rhythmic process
FPKM:6.32 TPM:6.92
2970 A_BomoFB_comp10486_c3_seq14
2487bp
 PREDICTED:_ATP-binding_cassette_sub-family_G_member_1-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010888 P negative regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0055037 C recycling endosome
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
FPKM:0.04 TPM:0.04
previous next from show/35635

- SilkBase 1999-2023 -