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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2881 A_BomoFB_comp104815_c0_seq1
744bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
FPKM:3.19 TPM:3.50
2882 A_BomoFB_comp10481_c0_seq1
6447bp
 non-LTR_retrotransposon_CATS_[Bombyx_mori]
FPKM:2.60 TPM:2.85
2883 A_BomoFB_comp10481_c0_seq2
595bp
 non-LTR_retrotransposon_CATS_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2884 A_BomoFB_comp10481_c0_seq3
6675bp
 non-LTR_retrotransposon_CATS_[Bombyx_mori]
FPKM:6.32 TPM:6.93
2885 A_BomoFB_comp10481_c1_seq1
1367bp
 retrovirus-related_pol_polyprotein_from_transposon_tnt_1-94_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:4.49 TPM:4.92
2886 A_BomoFB_comp104828_c0_seq1
2147bp
 PREDICTED:_unconventional_myosin-IXa-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003774 F cytoskeletal motor activity
GO:0005096 F GTPase activator activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016459 C myosin complex
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
FPKM:3.43 TPM:3.76
2887 A_BomoFB_comp10482_c0_seq1
2997bp
 45_kDa_immunophilin_FKBP45_[Bombyx_mori]
GO:0000412 P histone peptidyl-prolyl isomerization
GO:0003677 F DNA binding
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005528 F FK506 binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006457 P protein folding
GO:0016853 F isomerase activity
GO:0018208 P peptidyl-proline modification
FPKM:14.64 TPM:16.05
2888 A_BomoFB_comp10482_c1_seq1
557bp
FPKM:5.23 TPM:5.73
2889 A_BomoFB_comp10482_c1_seq10
1247bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2890 A_BomoFB_comp10482_c1_seq11
1096bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2891 A_BomoFB_comp10482_c1_seq12
585bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2892 A_BomoFB_comp10482_c1_seq13
1815bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:6.34 TPM:6.95
2893 A_BomoFB_comp10482_c1_seq14
1084bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:4.62 TPM:5.06
2894 A_BomoFB_comp10482_c1_seq15
1153bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:5.70 TPM:6.25
2895 A_BomoFB_comp10482_c1_seq16
547bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:4.83 TPM:5.29
2896 A_BomoFB_comp10482_c1_seq17
1713bp
 Abhydrolase_domain-containing_protein_FAM108C1_[Papilio_xuthus]
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:13.87 TPM:15.20
2897 A_BomoFB_comp10482_c1_seq2
434bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.38 TPM:1.51
2898 A_BomoFB_comp10482_c1_seq3
1122bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2899 A_BomoFB_comp10482_c1_seq4
1209bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2900 A_BomoFB_comp10482_c1_seq5
971bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2901 A_BomoFB_comp10482_c1_seq6
219bp
FPKM:1.23 TPM:1.34
2902 A_BomoFB_comp10482_c1_seq7
1690bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2903 A_BomoFB_comp10482_c1_seq8
1441bp
 PREDICTED:_uncharacterized_protein_CG1161_[Papilio_polytes]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:6.01 TPM:6.59
2904 A_BomoFB_comp10482_c1_seq9
1456bp
 PREDICTED:_uncharacterized_protein_CG1161_[Papilio_polytes]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.33 TPM:2.55
2905 A_BomoFB_comp10483_c0_seq1
3113bp
 PREDICTED:_probable_2-oxoglutarate_dehydrogenase_E1_component_DHKTD1_homolog,_mitochondrial_[Papilio_polytes]
GO:0004591 F oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006091 P generation of precursor metabolites and energy
GO:0006096 P glycolytic process
GO:0006099 P tricarboxylic acid cycle
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016624 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0030976 F thiamine pyrophosphate binding
GO:0031966 C mitochondrial membrane
GO:0045252 C oxoglutarate dehydrogenase complex
GO:0055114 P obsolete oxidation-reduction process
FPKM:7.62 TPM:8.35
2906 A_BomoFB_comp10483_c0_seq2
3004bp
 PREDICTED:_probable_2-oxoglutarate_dehydrogenase_E1_component_DHKTD1_homolog,_mitochondrial_[Papilio_polytes]
GO:0004591 F oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006091 P generation of precursor metabolites and energy
GO:0006096 P glycolytic process
GO:0006099 P tricarboxylic acid cycle
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016624 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0030976 F thiamine pyrophosphate binding
GO:0031966 C mitochondrial membrane
GO:0045252 C oxoglutarate dehydrogenase complex
GO:0055114 P obsolete oxidation-reduction process
FPKM:6.33 TPM:6.93
2907 A_BomoFB_comp104842_c0_seq1
837bp
 PREDICTED:_uncharacterized_protein_LOC101740157_isoform_X1_[Bombyx_mori]
FPKM:2.57 TPM:2.82
2908 A_BomoFB_comp10484_c0_seq1
422bp
FPKM:0.60 TPM:0.66
2909 A_BomoFB_comp10484_c0_seq10
1077bp
 olfactory_receptor_[Bombyx_mori]
FPKM:3.30 TPM:3.62
2910 A_BomoFB_comp10484_c0_seq11
524bp
FPKM:0.49 TPM:0.53
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