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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

2671

A_BomoFB_comp10464_c1_seq4

2607bp

Bomo_Chr20

Putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX15_[Papilio_xuthus]

GO:0000166	F	nucleotide binding
GO:0000398	P	mRNA splicing, via spliceosome
GO:0003676	F	nucleic acid binding
GO:0003725	F	double-stranded RNA binding
GO:0004004	F	RNA helicase activity
GO:0004386	F	helicase activity
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005681	C	spliceosomal complex
GO:0005689	C	U12-type spliceosomal complex
GO:0005730	C	nucleolus
GO:0005737	C	cytoplasm
GO:0006397	P	mRNA processing
GO:0008026	F	helicase activity
GO:0008380	P	RNA splicing
GO:0009636	P	response to toxic substance
GO:0016787	F	hydrolase activity
GO:0043279	P	response to alkaloid
GO:0044822	F	RNA binding
GO:0071008	C	U2-type post-mRNA release spliceosomal complex

FPKM:0.00 TPM:0.00

2672

A_BomoFB_comp10464_c1_seq40

2883bp

Bomo_Chr20

PREDICTED:_thioredoxin_reductase_1,_mitochondrial_isoform_X3_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0001666	P	response to hypoxia
GO:0004362	F	glutathione-disulfide reductase (NADPH) activity
GO:0004791	F	thioredoxin-disulfide reductase activity
GO:0005737	C	cytoplasm
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005875	C	microtubule associated complex
GO:0006974	P	cellular response to DNA damage stimulus
GO:0008340	P	determination of adult lifespan
GO:0016209	F	antioxidant activity
GO:0016491	F	oxidoreductase activity
GO:0016668	F	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0019233	P	sensory perception of pain
GO:0022008	P	neurogenesis
GO:0042803	F	protein homodimerization activity
GO:0045454	P	cell redox homeostasis
GO:0050660	F	flavin adenine dinucleotide binding
GO:0055114	P	obsolete oxidation-reduction process
GO:0098869	P	cellular oxidant detoxification

FPKM:0.00 TPM:0.00

2673

A_BomoFB_comp10464_c1_seq41

2574bp

Bomo_Chr24

Putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX15_[Papilio_xuthus]

GO:0000166	F	nucleotide binding
GO:0000398	P	mRNA splicing, via spliceosome
GO:0003676	F	nucleic acid binding
GO:0003725	F	double-stranded RNA binding
GO:0004004	F	RNA helicase activity
GO:0004386	F	helicase activity
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005681	C	spliceosomal complex
GO:0005689	C	U12-type spliceosomal complex
GO:0005730	C	nucleolus
GO:0005737	C	cytoplasm
GO:0006397	P	mRNA processing
GO:0008026	F	helicase activity
GO:0008380	P	RNA splicing
GO:0009636	P	response to toxic substance
GO:0016787	F	hydrolase activity
GO:0043279	P	response to alkaloid
GO:0044822	F	RNA binding
GO:0071008	C	U2-type post-mRNA release spliceosomal complex

FPKM:1.89 TPM:2.07

2674

A_BomoFB_comp10464_c1_seq42

690bp

Bomo_Scaf140

gamma-glutamylcysteine_ligase_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0004357	F	glutamate-cysteine ligase activity
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006749	P	glutathione metabolic process
GO:0006750	P	glutathione biosynthetic process
GO:0006974	P	cellular response to DNA damage stimulus
GO:0016874	F	ligase activity
GO:0017109	C	glutamate-cysteine ligase complex
GO:0048471	C	perinuclear region of cytoplasm

FPKM:0.00 TPM:0.00

2675

A_BomoFB_comp10464_c1_seq43

1161bp

Bomo_Chr10

FPKM:0.00 TPM:0.00

2676

A_BomoFB_comp10464_c1_seq44

2170bp

Bomo_Scaf002

PREDICTED:_trifunctional_enzyme_subunit_beta,_mitochondrial_[Bombyx_mori]

GO:0003824	F	catalytic activity
GO:0003988	F	acetyl-CoA C-acyltransferase activity
GO:0005739	C	mitochondrion
GO:0005741	C	mitochondrial outer membrane
GO:0005743	C	mitochondrial inner membrane
GO:0005783	C	endoplasmic reticulum
GO:0006629	P	lipid metabolic process
GO:0006631	P	fatty acid metabolic process
GO:0006635	P	fatty acid beta-oxidation
GO:0008152	P	metabolic process
GO:0016020	C	membrane
GO:0016740	F	transferase activity
GO:0016746	F	acyltransferase activity
GO:0016747	F	acyltransferase activity, transferring groups other than amino-acyl groups

FPKM:0.00 TPM:0.00

2677

A_BomoFB_comp10464_c1_seq45

1421bp

Bomo_Scaf078

gamma-glutamylcysteine_ligase_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0000287	F	magnesium ion binding
GO:0004357	F	glutamate-cysteine ligase activity
GO:0005524	F	ATP binding
GO:0005829	C	cytosol
GO:0006534	P	cysteine metabolic process
GO:0006536	P	glutamate metabolic process
GO:0006749	P	glutathione metabolic process
GO:0006750	P	glutathione biosynthetic process
GO:0006979	P	response to oxidative stress
GO:0008637	P	apoptotic mitochondrial changes
GO:0009408	P	response to heat
GO:0009410	P	response to xenobiotic stimulus
GO:0009725	P	response to hormone
GO:0016595	F	glutamate binding
GO:0016874	F	ligase activity
GO:0017109	C	glutamate-cysteine ligase complex
GO:0019852	P	L-ascorbic acid metabolic process
GO:0031397	P	negative regulation of protein ubiquitination
GO:0032436	P	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043066	P	negative regulation of apoptotic process
GO:0043524	P	negative regulation of neuron apoptotic process
GO:0043531	F	ADP binding
GO:0045454	P	cell redox homeostasis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046685	P	response to arsenic-containing substance
GO:0046982	F	protein heterodimerization activity
GO:0050662	F	obsolete coenzyme binding
GO:0050880	P	blood vessel diameter maintenance
GO:0051409	P	response to nitrosative stress
GO:0051900	P	regulation of mitochondrial depolarization
GO:2001237	P	negative regulation of extrinsic apoptotic signaling pathway

FPKM:0.93 TPM:1.02

2678

A_BomoFB_comp10464_c1_seq46

1173bp

Bomo_Chr20

FPKM:0.00 TPM:0.00

2679

A_BomoFB_comp10464_c1_seq47

2497bp

Bomo_Chr20

gamma-glutamylcysteine_ligase_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0000287	F	magnesium ion binding
GO:0004357	F	glutamate-cysteine ligase activity
GO:0005524	F	ATP binding
GO:0005829	C	cytosol
GO:0006534	P	cysteine metabolic process
GO:0006536	P	glutamate metabolic process
GO:0006749	P	glutathione metabolic process
GO:0006750	P	glutathione biosynthetic process
GO:0006979	P	response to oxidative stress
GO:0008637	P	apoptotic mitochondrial changes
GO:0009408	P	response to heat
GO:0009410	P	response to xenobiotic stimulus
GO:0009725	P	response to hormone
GO:0016595	F	glutamate binding
GO:0016874	F	ligase activity
GO:0017109	C	glutamate-cysteine ligase complex
GO:0019852	P	L-ascorbic acid metabolic process
GO:0031397	P	negative regulation of protein ubiquitination
GO:0032436	P	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043066	P	negative regulation of apoptotic process
GO:0043524	P	negative regulation of neuron apoptotic process
GO:0043531	F	ADP binding
GO:0045454	P	cell redox homeostasis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046685	P	response to arsenic-containing substance
GO:0046982	F	protein heterodimerization activity
GO:0050662	F	obsolete coenzyme binding
GO:0050880	P	blood vessel diameter maintenance
GO:0051409	P	response to nitrosative stress
GO:0051900	P	regulation of mitochondrial depolarization
GO:2001237	P	negative regulation of extrinsic apoptotic signaling pathway

FPKM:3.90 TPM:4.28

2680

A_BomoFB_comp10464_c1_seq48

3979bp

Bomo_Scaf078

perilipin_[Bombyx_mori]

GO:0005737	C	cytoplasm
GO:0005811	C	lipid droplet
GO:0006642	P	triglyceride mobilization
GO:0006810	P	transport
GO:0006869	P	lipid transport
GO:0010883	P	regulation of lipid storage
GO:0010898	P	positive regulation of triglyceride catabolic process
GO:0019915	P	lipid storage
GO:0022008	P	neurogenesis
GO:0032994	C	protein-lipid complex
GO:0034389	P	lipid droplet organization
GO:1990044	P	protein localization to lipid droplet

FPKM:86.28 TPM:94.54

2681

A_BomoFB_comp10464_c1_seq49

1174bp

Bomo_Scaf140

FPKM:0.00 TPM:0.00

2682

A_BomoFB_comp10464_c1_seq5

2873bp

Bomo_Chr10

PREDICTED:_thioredoxin_reductase_1,_mitochondrial_isoform_X3_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0001666	P	response to hypoxia
GO:0004362	F	glutathione-disulfide reductase (NADPH) activity
GO:0004791	F	thioredoxin-disulfide reductase activity
GO:0005737	C	cytoplasm
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005875	C	microtubule associated complex
GO:0006974	P	cellular response to DNA damage stimulus
GO:0008340	P	determination of adult lifespan
GO:0016209	F	antioxidant activity
GO:0016491	F	oxidoreductase activity
GO:0016668	F	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0019233	P	sensory perception of pain
GO:0022008	P	neurogenesis
GO:0042803	F	protein homodimerization activity
GO:0045454	P	cell redox homeostasis
GO:0050660	F	flavin adenine dinucleotide binding
GO:0055114	P	obsolete oxidation-reduction process
GO:0098869	P	cellular oxidant detoxification

FPKM:0.00 TPM:0.00

2683

A_BomoFB_comp10464_c1_seq50

2594bp

Bomo_Scaf083

gamma-glutamylcysteine_ligase_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0000287	F	magnesium ion binding
GO:0004357	F	glutamate-cysteine ligase activity
GO:0005524	F	ATP binding
GO:0005829	C	cytosol
GO:0006534	P	cysteine metabolic process
GO:0006536	P	glutamate metabolic process
GO:0006749	P	glutathione metabolic process
GO:0006750	P	glutathione biosynthetic process
GO:0006979	P	response to oxidative stress
GO:0008637	P	apoptotic mitochondrial changes
GO:0009408	P	response to heat
GO:0009410	P	response to xenobiotic stimulus
GO:0009725	P	response to hormone
GO:0016595	F	glutamate binding
GO:0016874	F	ligase activity
GO:0017109	C	glutamate-cysteine ligase complex
GO:0019852	P	L-ascorbic acid metabolic process
GO:0031397	P	negative regulation of protein ubiquitination
GO:0032436	P	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043066	P	negative regulation of apoptotic process
GO:0043524	P	negative regulation of neuron apoptotic process
GO:0043531	F	ADP binding
GO:0045454	P	cell redox homeostasis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046685	P	response to arsenic-containing substance
GO:0046982	F	protein heterodimerization activity
GO:0050662	F	obsolete coenzyme binding
GO:0050880	P	blood vessel diameter maintenance
GO:0051409	P	response to nitrosative stress
GO:0051900	P	regulation of mitochondrial depolarization
GO:2001237	P	negative regulation of extrinsic apoptotic signaling pathway

FPKM:1.19 TPM:1.31

2684

A_BomoFB_comp10464_c1_seq51

434bp

Bomo_Scaf064

FPKM:4.14 TPM:4.53

2685

A_BomoFB_comp10464_c1_seq52

700bp

Bomo_Scaf064

gamma-glutamylcysteine_ligase_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0004357	F	glutamate-cysteine ligase activity
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006749	P	glutathione metabolic process
GO:0006750	P	glutathione biosynthetic process
GO:0006974	P	cellular response to DNA damage stimulus
GO:0016874	F	ligase activity
GO:0017109	C	glutamate-cysteine ligase complex
GO:0048471	C	perinuclear region of cytoplasm

FPKM:0.87 TPM:0.96

2686

A_BomoFB_comp10464_c1_seq6

2903bp

Bomo_Chr20

PREDICTED:_thioredoxin_reductase_1,_mitochondrial_isoform_X3_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0001666	P	response to hypoxia
GO:0004362	F	glutathione-disulfide reductase (NADPH) activity
GO:0004791	F	thioredoxin-disulfide reductase activity
GO:0005737	C	cytoplasm
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005875	C	microtubule associated complex
GO:0006974	P	cellular response to DNA damage stimulus
GO:0008340	P	determination of adult lifespan
GO:0016209	F	antioxidant activity
GO:0016491	F	oxidoreductase activity
GO:0016668	F	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0019233	P	sensory perception of pain
GO:0022008	P	neurogenesis
GO:0042803	F	protein homodimerization activity
GO:0045454	P	cell redox homeostasis
GO:0050660	F	flavin adenine dinucleotide binding
GO:0055114	P	obsolete oxidation-reduction process
GO:0098869	P	cellular oxidant detoxification

FPKM:0.00 TPM:0.00

2687

A_BomoFB_comp10464_c1_seq7

3991bp

Bomo_Scaf078

perilipin_[Bombyx_mori]

GO:0005737	C	cytoplasm
GO:0005811	C	lipid droplet
GO:0006642	P	triglyceride mobilization
GO:0006810	P	transport
GO:0006869	P	lipid transport
GO:0010883	P	regulation of lipid storage
GO:0010898	P	positive regulation of triglyceride catabolic process
GO:0019915	P	lipid storage
GO:0022008	P	neurogenesis
GO:0032994	C	protein-lipid complex
GO:0034389	P	lipid droplet organization
GO:1990044	P	protein localization to lipid droplet

FPKM:27.96 TPM:30.64

2688

A_BomoFB_comp10464_c1_seq8

2704bp

Bomo_Scaf083

Putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX15_[Papilio_xuthus]

GO:0000166	F	nucleotide binding
GO:0000398	P	mRNA splicing, via spliceosome
GO:0003676	F	nucleic acid binding
GO:0003725	F	double-stranded RNA binding
GO:0004004	F	RNA helicase activity
GO:0004386	F	helicase activity
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005681	C	spliceosomal complex
GO:0005689	C	U12-type spliceosomal complex
GO:0005730	C	nucleolus
GO:0005737	C	cytoplasm
GO:0006397	P	mRNA processing
GO:0008026	F	helicase activity
GO:0008380	P	RNA splicing
GO:0009636	P	response to toxic substance
GO:0016787	F	hydrolase activity
GO:0043279	P	response to alkaloid
GO:0044822	F	RNA binding
GO:0071008	C	U2-type post-mRNA release spliceosomal complex

FPKM:3.09 TPM:3.38

2689

A_BomoFB_comp10464_c1_seq9

2725bp

Bomo_Scaf048

Putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX15_[Papilio_xuthus]

GO:0000166	F	nucleotide binding
GO:0000398	P	mRNA splicing, via spliceosome
GO:0003676	F	nucleic acid binding
GO:0003725	F	double-stranded RNA binding
GO:0004004	F	RNA helicase activity
GO:0004386	F	helicase activity
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005681	C	spliceosomal complex
GO:0005689	C	U12-type spliceosomal complex
GO:0005730	C	nucleolus
GO:0005737	C	cytoplasm
GO:0006397	P	mRNA processing
GO:0008026	F	helicase activity
GO:0008380	P	RNA splicing
GO:0009636	P	response to toxic substance
GO:0016787	F	hydrolase activity
GO:0043279	P	response to alkaloid
GO:0044822	F	RNA binding
GO:0071008	C	U2-type post-mRNA release spliceosomal complex

FPKM:1.18 TPM:1.30

2690

A_BomoFB_comp10465_c0_seq1

1340bp

Bomo_Scaf019

FPKM:0.70 TPM:0.77

2691

A_BomoFB_comp10465_c0_seq2

3130bp

Bomo_Scaf043

PREDICTED:_BMP_and_activin_membrane-bound_inhibitor_homolog_[Papilio_xuthus]

GO:0005109	F	frizzled binding
GO:0005737	C	cytoplasm
GO:0005886	C	plasma membrane
GO:0007179	P	transforming growth factor beta receptor signaling pathway
GO:0008284	P	positive regulation of cell population proliferation
GO:0008360	P	regulation of cell shape
GO:0010718	P	positive regulation of epithelial to mesenchymal transition
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016477	P	cell migration
GO:0030512	P	negative regulation of transforming growth factor beta receptor signaling pathway
GO:0032092	P	positive regulation of protein binding
GO:0035413	P	positive regulation of canonical Wnt signaling pathway
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0090263	P	positive regulation of canonical Wnt signaling pathway

FPKM:5.72 TPM:6.27

2692

A_BomoFB_comp104660_c0_seq1

680bp

Bomo_Chr9

PREDICTED:_protein_GDAP2_homolog_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0008150	P	biological_process

FPKM:3.93 TPM:4.31

2693

A_BomoFB_comp104662_c0_seq1

331bp

Bomo_Chr27

PREDICTED:_uncharacterized_protein_LOC101745377_[Bombyx_mori]

FPKM:6.21 TPM:6.80

2694

A_BomoFB_comp104668_c0_seq1

1438bp

Bomo_Chr27

PREDICTED:_probable_cation-transporting_ATPase_13A3_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0005524	F	ATP binding
GO:0006812	P	cation transport
GO:0008152	P	metabolic process
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016787	F	hydrolase activity
GO:0016887	F	ATP hydrolysis activity
GO:0046872	F	metal ion binding

FPKM:2.34 TPM:2.56

2695

A_BomoFB_comp10466_c0_seq1

1971bp

Bomo_Chr20

G_protein_alpha_S_subunit_Gs2_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0003924	F	GTPase activity
GO:0004871	F	obsolete signal transducer activity
GO:0005525	F	GTP binding
GO:0007165	P	signal transduction
GO:0007186	P	G protein-coupled receptor signaling pathway
GO:0007191	P	adenylate cyclase-activating dopamine receptor signaling pathway
GO:0007606	P	sensory perception of chemical stimulus
GO:0007608	P	sensory perception of smell
GO:0008152	P	metabolic process
GO:0019001	F	guanyl nucleotide binding
GO:0031683	F	G-protein beta/gamma-subunit complex binding
GO:0046872	F	metal ion binding
GO:0050896	P	response to stimulus

FPKM:9.35 TPM:10.25

2696

A_BomoFB_comp10466_c0_seq2

1429bp

Bomo_Chr20

G_protein_alpha_S_subunit_Gs2_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0003924	F	GTPase activity
GO:0004871	F	obsolete signal transducer activity
GO:0005525	F	GTP binding
GO:0007165	P	signal transduction
GO:0007186	P	G protein-coupled receptor signaling pathway
GO:0007191	P	adenylate cyclase-activating dopamine receptor signaling pathway
GO:0007606	P	sensory perception of chemical stimulus
GO:0007608	P	sensory perception of smell
GO:0008152	P	metabolic process
GO:0019001	F	guanyl nucleotide binding
GO:0031683	F	G-protein beta/gamma-subunit complex binding
GO:0046872	F	metal ion binding
GO:0050896	P	response to stimulus

FPKM:3.75 TPM:4.11

2697

A_BomoFB_comp10467_c0_seq1

1935bp

Bomo_Scaf112

PREDICTED:_uncharacterized_protein_LOC106141856_[Amyelois_transitella]

FPKM:3.07 TPM:3.36

2698

A_BomoFB_comp10467_c0_seq2

1016bp

Bomo_Chr16

trafficking_protein_particle_complex_subunit_3_[Bombyx_mori]

GO:0000139	C	Golgi membrane
GO:0005783	C	endoplasmic reticulum
GO:0005794	C	Golgi apparatus
GO:0005829	C	cytosol
GO:0006810	P	transport
GO:0006888	P	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192	P	vesicle-mediated transport
GO:0030008	C	TRAPP complex