SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/221677
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5911 A_BomoEE_comp1096_c0_seq1
313bp
 hypothetical_protein_[Herpetosiphon_geysericola]
FPKM:0.12 TPM:0.20
5912 A_BomoEE_comp1096_c1_seq1
263bp
 hypothetical_protein_JGI23_01858_[bacterium_JGI-23]
FPKM:0.18 TPM:0.31
5913 A_BomoEE_comp1097019_c0_seq1
245bp
FPKM:0.43 TPM:0.74
5914 A_BomoEE_comp1097038_c0_seq1
216bp
 proline_dehydrogenase_[Staphylococcus_succinus]
FPKM:0.48 TPM:0.83
5915 A_BomoEE_comp1097061_c0_seq1
236bp
FPKM:0.36 TPM:0.62
5916 A_BomoEE_comp109707_c0_seq1
680bp
 PREDICTED:_talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0002576 P platelet degranulation
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0006928 P movement of cell or subcellular component
GO:0006936 P muscle contraction
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007043 P cell-cell junction assembly
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016032 P viral process
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0036498 P IRE1-mediated unfolded protein response
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
FPKM:9.77 TPM:17.04
5917 A_BomoEE_comp1097181_c0_seq1
637bp
FPKM:0.28 TPM:0.49
5918 A_BomoEE_comp1097197_c0_seq1
259bp
FPKM:0.27 TPM:0.48
5919 A_BomoEE_comp1097209_c0_seq1
646bp
FPKM:0.26 TPM:0.45
5920 A_BomoEE_comp1097247_c0_seq1
1049bp
FPKM:0.26 TPM:0.45
5921 A_BomoEE_comp1097280_c0_seq1
232bp
 PREDICTED:_transcriptional_regulator_ERG_[Clupea_harengus]
FPKM:0.00 TPM:0.00
5922 A_BomoEE_comp1097395_c0_seq1
301bp
 unnamed_protein_product_[Vitrella_brassicaformis_CCMP3155]
FPKM:0.25 TPM:0.44
5923 A_BomoEE_comp1097429_c0_seq1
464bp
 hypothetical_protein_RF11_12154_[Thelohanellus_kitauei]
FPKM:0.31 TPM:0.53
5924 A_BomoEE_comp1097529_c0_seq1
273bp
 BnaC08g47540D_[Brassica_napus]
FPKM:0.16 TPM:0.28
5925 A_BomoEE_comp1097611_c0_seq1
206bp
FPKM:0.76 TPM:1.32
5926 A_BomoEE_comp109761_c0_seq1
1392bp
 PREDICTED:_ras-related_protein_Rab-27A_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001750 C photoreceptor outer segment
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0006605 P protein targeting
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007596 P blood coagulation
GO:0008152 P metabolic process
GO:0010628 P positive regulation of gene expression
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016324 C apical plasma membrane
GO:0019003 F GDP binding
GO:0019882 P antigen processing and presentation
GO:0019904 F protein domain specific binding
GO:0030141 C secretory granule
GO:0030318 P melanocyte differentiation
GO:0030425 C dendrite
GO:0030667 C secretory granule membrane
GO:0031489 F myosin V binding
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032585 C multivesicular body membrane
GO:0033093 C Weibel-Palade body
GO:0036257 P multivesicular body organization
GO:0042470 C melanosome
GO:0043316 P cytotoxic T cell degranulation
GO:0043320 P natural killer cell degranulation
GO:0043473 P pigmentation
GO:0045921 P positive regulation of exocytosis
GO:0050766 P positive regulation of phagocytosis
GO:0051875 P pigment granule localization
GO:0051904 P pigment granule transport
GO:0070062 C extracellular exosome
GO:0070382 C exocytic vesicle
GO:0071985 P multivesicular body sorting pathway
GO:0097278 P complement-dependent cytotoxicity
GO:1903307 P positive regulation of regulated secretory pathway
GO:1903428 P positive regulation of reactive oxygen species biosynthetic process
GO:1903435 P positive regulation of constitutive secretory pathway
GO:1990182 P exosomal secretion
FPKM:6.14 TPM:10.70
5927 A_BomoEE_comp1097726_c0_seq1
226bp
 hypothetical_protein_[Candidatus_Alistipes_marseilloanorexicus]
FPKM:0.14 TPM:0.24
5928 A_BomoEE_comp1097745_c0_seq1
236bp
FPKM:0.24 TPM:0.42
5929 A_BomoEE_comp1097830_c0_seq1
253bp
 hypothetical_protein_ACN42_g4822_[Penicillium_freii]
FPKM:0.19 TPM:0.34
5930 A_BomoEE_comp1097907_c0_seq1
651bp
 PREDICTED:_uncharacterized_protein_LOC106106414_[Papilio_polytes]
FPKM:0.27 TPM:0.47
5931 A_BomoEE_comp1097962_c0_seq1
215bp
FPKM:0.49 TPM:0.85
5932 A_BomoEE_comp1097993_c0_seq1
362bp
FPKM:0.09 TPM:0.15
5933 A_BomoEE_comp10979_c0_seq1
220bp
FPKM:0.15 TPM:0.26
5934 A_BomoEE_comp1098068_c0_seq1
428bp
FPKM:0.22 TPM:0.39
5935 A_BomoEE_comp10980_c0_seq1
424bp
 CG3066_[Drosophila_melanogaster]
FPKM:0.26 TPM:0.45
5936 A_BomoEE_comp1098208_c0_seq1
484bp
FPKM:0.18 TPM:0.32
5937 A_BomoEE_comp1098239_c0_seq1
388bp
FPKM:0.15 TPM:0.26
5938 A_BomoEE_comp1098367_c0_seq1
242bp
 hypothetical_protein_[Zobellia_uliginosa]
FPKM:0.66 TPM:1.16
5939 A_BomoEE_comp1098368_c0_seq1
228bp
FPKM:0.00 TPM:0.00
5940 A_BomoEE_comp1098371_c0_seq1
234bp
FPKM:0.00 TPM:0.00
previous next from show/221677

- SilkBase 1999-2023 -