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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4261 A_BomoEE_comp104944_c0_seq1
1518bp
 PREDICTED:_nuclear_receptor-binding_protein_homolog_[Bombyx_mori]
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030027 C lamellipodium
GO:0042995 C cell projection
GO:0048471 C perinuclear region of cytoplasm
FPKM:9.45 TPM:16.49
4262 A_BomoEE_comp1049462_c0_seq1
211bp
FPKM:0.17 TPM:0.30
4263 A_BomoEE_comp1049507_c0_seq1
293bp
FPKM:0.27 TPM:0.47
4264 A_BomoEE_comp1049517_c0_seq1
258bp
 PREDICTED:_auxin-responsive_protein_IAA4-like_[Solanum_pennellii]
FPKM:0.18 TPM:0.32
4265 A_BomoEE_comp104954_c0_seq1
857bp
 heat-inducible_transcription_repressor_HrcA_[Oscillibacter_sp._ER4]
FPKM:9.76 TPM:17.02
4266 A_BomoEE_comp10495_c0_seq1
365bp
FPKM:0.17 TPM:0.29
4267 A_BomoEE_comp1049629_c0_seq1
534bp
FPKM:0.27 TPM:0.47
4268 A_BomoEE_comp1049701_c0_seq1
337bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_isoform_X1_[Bombyx_mori]
FPKM:0.40 TPM:0.69
4269 A_BomoEE_comp1049714_c0_seq1
218bp
FPKM:0.46 TPM:0.81
4270 A_BomoEE_comp1049756_c0_seq1
302bp
 peptidase_C25_[Lacinutrix_sp._5H-3-7-4]
FPKM:0.50 TPM:0.87
4271 A_BomoEE_comp104976_c0_seq1
2294bp
 PREDICTED:_vacuolar_protein_sorting-associated_protein_11_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005884 C actin filament
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0006914 P autophagy
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0008270 F zinc ion binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0019904 F protein domain specific binding
GO:0019905 F syntaxin binding
GO:0030123 C AP-3 adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030139 C endocytic vesicle
GO:0030674 F protein-macromolecule adaptor activity
GO:0030897 C HOPS complex
GO:0031410 C cytoplasmic vesicle
GO:0031647 P regulation of protein stability
GO:0031902 C late endosome membrane
GO:0033263 C CORVET complex
GO:0034058 P endosomal vesicle fusion
GO:0035542 P regulation of SNARE complex assembly
GO:0046872 F metal ion binding
GO:1901998 P toxin transport
GO:1902115 P regulation of organelle assembly
GO:1903364 P positive regulation of cellular protein catabolic process
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:2000643 P positive regulation of early endosome to late endosome transport
FPKM:8.14 TPM:14.20
4272 A_BomoEE_comp10497_c0_seq1
1253bp
FPKM:0.25 TPM:0.43
4273 A_BomoEE_comp1049819_c0_seq1
243bp
 SDR_family_oxidoreductase_[Nocardia_sp._BMG111209]
FPKM:0.87 TPM:1.53
4274 A_BomoEE_comp1049897_c0_seq1
398bp
 PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_13-like_isoform_X2_[Tetranychus_urticae]
FPKM:0.36 TPM:0.63
4275 A_BomoEE_comp1049906_c0_seq1
611bp
FPKM:0.24 TPM:0.42
4276 A_BomoEE_comp1049914_c0_seq1
521bp
FPKM:0.23 TPM:0.41
4277 A_BomoEE_comp1049954_c0_seq1
503bp
 Cation_efflux_family_protein_[Sphingobacterium_sp._PM2-P1-29]
FPKM:0.29 TPM:0.51
4278 A_BomoEE_comp1049_c0_seq1
351bp
FPKM:0.14 TPM:0.24
4279 A_BomoEE_comp1049_c1_seq1
239bp
 hypothetical_protein_[Bacillus_pseudalcaliphilus]
FPKM:0.23 TPM:0.40
4280 A_BomoEE_comp104_c0_seq1
395bp
FPKM:0.33 TPM:0.57
4281 A_BomoEE_comp104_c1_seq1
289bp
FPKM:0.00 TPM:0.00
4282 A_BomoEE_comp1050010_c0_seq1
455bp
 PREDICTED:_sodium_channel_protein_type_4_subunit_alpha_B-like_isoform_X3_[Lingula_anatina]
FPKM:0.29 TPM:0.50
4283 A_BomoEE_comp1050036_c0_seq1
380bp
FPKM:0.35 TPM:0.62
4284 A_BomoEE_comp1050051_c0_seq1
753bp
FPKM:0.25 TPM:0.44
4285 A_BomoEE_comp1050082_c0_seq1
258bp
 TKL_protein_kinase,_variant_[Saprolegnia_diclina_VS20]
FPKM:0.00 TPM:0.00
4286 A_BomoEE_comp105009_c0_seq1
1206bp
FPKM:7.43 TPM:12.95
4287 A_BomoEE_comp1050232_c0_seq1
244bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.32 TPM:0.57
4288 A_BomoEE_comp1050246_c0_seq1
556bp
 hypothetical_protein_[Salmonella_enterica]
FPKM:0.25 TPM:0.44
4289 A_BomoEE_comp1050265_c0_seq1
414bp
 PREDICTED:_hydrocephalus-inducing_protein_homolog_[Bombyx_mori]
FPKM:0.30 TPM:0.53
4290 A_BomoEE_comp1050268_c0_seq1
211bp
FPKM:0.00 TPM:0.00
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