SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/221677
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
121 A_BomoEE_comp10043_c0_seq1
325bp
putative_exonuclease_[Homo_sapiens]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0009036 F type II site-specific deoxyribonuclease activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0032197 P transposition, RNA-mediated
GO:0032199 P reverse transcription involved in RNA-mediated transposition
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.05 TPM:0.09
122 A_BomoEE_comp100447_c0_seq1
736bp
FPKM:8.46 TPM:14.76
123 A_BomoEE_comp100448_c0_seq1
790bp
 hypothetical_protein_KGM_05879_[Danaus_plexippus]
FPKM:6.06 TPM:10.57
124 A_BomoEE_comp10044_c0_seq1
660bp
FPKM:0.20 TPM:0.35
125 A_BomoEE_comp1004612_c0_seq1
655bp
FPKM:0.18 TPM:0.32
126 A_BomoEE_comp1004666_c0_seq1
246bp
 NAD(+)_synthase_[Bacteroides_coprophilus]
FPKM:0.21 TPM:0.37
127 A_BomoEE_comp1004682_c0_seq1
892bp
FPKM:0.25 TPM:0.43
128 A_BomoEE_comp1004690_c0_seq1
218bp
FPKM:0.62 TPM:1.08
129 A_BomoEE_comp1004766_c0_seq1
356bp
FPKM:0.18 TPM:0.31
130 A_BomoEE_comp100476_c0_seq1
236bp
FPKM:15.39 TPM:26.85
131 A_BomoEE_comp1004785_c0_seq1
400bp
 hypothetical_protein_[Porphyromonas_catoniae]
FPKM:0.14 TPM:0.25
132 A_BomoEE_comp1004786_c0_seq1
225bp
FPKM:0.69 TPM:1.21
133 A_BomoEE_comp10047_c0_seq1
254bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
134 A_BomoEE_comp10047_c0_seq2
224bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.56 TPM:0.98
135 A_BomoEE_comp10048_c0_seq1
389bp
FPKM:0.45 TPM:0.79
136 A_BomoEE_comp1005080_c0_seq1
507bp
FPKM:0.36 TPM:0.63
137 A_BomoEE_comp10051_c0_seq1
360bp
FPKM:0.22 TPM:0.38
138 A_BomoEE_comp1005231_c0_seq1
251bp
FPKM:0.20 TPM:0.35
139 A_BomoEE_comp1005248_c0_seq1
213bp
 hypothetical_protein_[Streptococcus_suis]
FPKM:0.50 TPM:0.88
140 A_BomoEE_comp100526_c0_seq1
510bp
FPKM:1.97 TPM:3.44
141 A_BomoEE_comp10052_c0_seq1
529bp
FPKM:0.32 TPM:0.56
142 A_BomoEE_comp1005344_c0_seq1
294bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Amyelois_transitella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:0.47 TPM:0.81
143 A_BomoEE_comp10053_c0_seq1
237bp
 AsnC_family_transcriptional_regulator_[Desulfobulbus_mediterraneus]
FPKM:0.12 TPM:0.21
144 A_BomoEE_comp1005441_c0_seq1
249bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:0.51 TPM:0.89
145 A_BomoEE_comp10055_c0_seq1
219bp
FPKM:0.46 TPM:0.80
146 A_BomoEE_comp1005655_c0_seq1
455bp
FPKM:0.43 TPM:0.75
147 A_BomoEE_comp1005750_c0_seq1
534bp
FPKM:0.25 TPM:0.43
148 A_BomoEE_comp1005751_c0_seq1
299bp
 hypothetical_protein_AMS20_00255_[Gemmatimonas_sp._SG8_28]
FPKM:0.19 TPM:0.33
149 A_BomoEE_comp1005759_c0_seq1
446bp
 PREDICTED:_activating_transcription_factor_7-interacting_protein_1-like,_partial_[Ciona_intestinalis]
FPKM:0.27 TPM:0.47
150 A_BomoEE_comp1005760_c0_seq1
423bp
 cysteine_ABC_transporter_ATP-binding_protein_[Staphylococcus_aureus]
FPKM:0.36 TPM:0.62
previous next from show/221677

- SilkBase 1999-2023 -