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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

6631

A_BomaMG_comp16222_c1_seq1

481bp

PREDICTED:_cell_cycle_checkpoint_protein_RAD1_[Papilio_polytes]

GO:0000077	P	DNA damage checkpoint signaling
GO:0003684	F	damaged DNA binding
GO:0004518	F	nuclease activity
GO:0004527	F	exonuclease activity
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005694	C	chromosome
GO:0006281	P	DNA repair
GO:0006974	P	cellular response to DNA damage stimulus
GO:0008408	F	3'-5' exonuclease activity
GO:0008853	F	exodeoxyribonuclease III activity
GO:0016787	F	hydrolase activity
GO:0021762	P	substantia nigra development
GO:0030896	C	checkpoint clamp complex
GO:0043231	C	intracellular membrane-bounded organelle
GO:0051598	P	meiotic recombination checkpoint signaling
GO:0071479	P	cellular response to ionizing radiation
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis

FPKM:2.49 TPM:2.31

6632

A_BomaMG_comp162234_c0_seq1

868bp

PREDICTED:_protein_CASC3_isoform_X3_[Bombyx_mori]

GO:0000184	P	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723	F	RNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006397	P	mRNA processing
GO:0006417	P	regulation of translation
GO:0006810	P	transport
GO:0008380	P	RNA splicing
GO:0016070	P	RNA metabolic process
GO:0016607	C	nuclear speck
GO:0035145	C	exon-exon junction complex
GO:0048471	C	perinuclear region of cytoplasm
GO:0051028	P	mRNA transport

FPKM:2.12 TPM:1.96

6633

A_BomaMG_comp16223_c0_seq1

432bp

PREDICTED:_protein_sprint_[Bombyx_mori]

FPKM:1.90 TPM:1.75

6634

A_BomaMG_comp16225_c0_seq1

1164bp

FPKM:2.96 TPM:2.74

6635

A_BomaMG_comp162269_c0_seq1

970bp

FPKM:1.72 TPM:1.59

6636

A_BomaMG_comp16226_c0_seq1

424bp

FPKM:1.40 TPM:1.29

6637

A_BomaMG_comp16226_c1_seq1

1749bp

PREDICTED:_histone-lysine_N-methyltransferase_SETD2-like_[Papilio_polytes]

GO:0001525	P	angiogenesis
GO:0001570	P	vasculogenesis
GO:0001763	P	morphogenesis of a branching structure
GO:0001843	P	neural tube closure
GO:0005634	C	nucleus
GO:0005694	C	chromosome
GO:0006298	P	mismatch repair
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006368	P	transcription elongation from RNA polymerase II promoter
GO:0008168	F	methyltransferase activity
GO:0010452	P	histone H3-K36 methylation
GO:0010468	P	regulation of gene expression
GO:0010793	P	regulation of mRNA export from nucleus
GO:0016568	P	chromatin organization
GO:0016740	F	transferase activity
GO:0018023	P	peptidyl-lysine trimethylation
GO:0018024	F	histone-lysine N-methyltransferase activity
GO:0030900	P	forebrain development
GO:0032259	P	methylation
GO:0034728	P	nucleosome organization
GO:0034968	P	histone lysine methylation
GO:0035441	P	cell migration involved in vasculogenesis
GO:0046975	F	histone methyltransferase activity (H3-K36 specific)
GO:0048332	P	mesoderm morphogenesis
GO:0048568	P	embryonic organ development
GO:0048701	P	embryonic cranial skeleton morphogenesis
GO:0048864	P	stem cell development
GO:0060039	P	pericardium development
GO:0060669	P	embryonic placenta morphogenesis
GO:0060977	P	coronary vasculature morphogenesis
GO:0097198	P	histone H3-K36 trimethylation
GO:0097676	P	histone H3-K36 dimethylation

FPKM:1.94 TPM:1.80

6638

A_BomaMG_comp16227_c0_seq1

527bp

PREDICTED:_LOW_QUALITY_PROTEIN:_ovochymase-2-like_[Bombyx_mori]

GO:0004252	F	serine-type endopeptidase activity
GO:0005509	F	calcium ion binding
GO:0005576	C	extracellular region
GO:0005615	C	extracellular space
GO:0005783	C	endoplasmic reticulum
GO:0005794	C	Golgi apparatus
GO:0006508	P	proteolysis
GO:0007596	P	blood coagulation
GO:0007599	P	hemostasis
GO:0008233	F	peptidase activity
GO:0008236	F	serine-type peptidase activity
GO:0016787	F	hydrolase activity
GO:0050728	P	negative regulation of inflammatory response
GO:0050819	P	negative regulation of coagulation
GO:1903142	P	positive regulation of establishment of endothelial barrier

FPKM:2.35 TPM:2.18

6639

A_BomaMG_comp16227_c1_seq1

486bp

PREDICTED:_LOW_QUALITY_PROTEIN:_ovochymase-2-like_[Bombyx_mori]

FPKM:1.78 TPM:1.65

6640

A_BomaMG_comp162281_c0_seq1

265bp

FPKM:1.96 TPM:1.81

6641

A_BomaMG_comp16228_c0_seq1

650bp

PREDICTED:_ATP-dependent_DNA_helicase_Q1-like_[Papilio_polytes]

GO:0000166	F	nucleotide binding
GO:0000724	P	double-strand break repair via homologous recombination
GO:0000733	P	obsolete DNA strand renaturation
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003678	F	DNA helicase activity
GO:0004386	F	helicase activity
GO:0005524	F	ATP binding
GO:0005575	C	cellular_component
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005694	C	chromosome
GO:0005737	C	cytoplasm
GO:0006260	P	DNA replication
GO:0006281	P	DNA repair
GO:0006310	P	DNA recombination
GO:0008026	F	helicase activity
GO:0008150	P	biological_process
GO:0009378	F	four-way junction helicase activity
GO:0016020	C	membrane
GO:0016787	F	hydrolase activity
GO:0032508	P	DNA duplex unwinding
GO:0036310	F	ATP-dependent DNA/DNA annealing activity
GO:0043140	F	3'-5' DNA helicase activity

FPKM:1.37 TPM:1.27

6642

A_BomaMG_comp16228_c1_seq1

253bp

PREDICTED:_ATP-dependent_DNA_helicase_Q1-like_[Amyelois_transitella]

GO:0000166	F	nucleotide binding
GO:0000724	P	double-strand break repair via homologous recombination
GO:0000733	P	obsolete DNA strand renaturation
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003678	F	DNA helicase activity
GO:0004386	F	helicase activity
GO:0005524	F	ATP binding
GO:0005575	C	cellular_component
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005694	C	chromosome
GO:0005737	C	cytoplasm
GO:0006260	P	DNA replication
GO:0006281	P	DNA repair
GO:0006310	P	DNA recombination
GO:0008026	F	helicase activity
GO:0008150	P	biological_process
GO:0009378	F	four-way junction helicase activity
GO:0016020	C	membrane
GO:0016787	F	hydrolase activity
GO:0032508	P	DNA duplex unwinding
GO:0036310	F	ATP-dependent DNA/DNA annealing activity
GO:0043140	F	3'-5' DNA helicase activity

FPKM:1.79 TPM:1.66

6643

A_BomaMG_comp16229_c0_seq1

424bp

FPKM:2.52 TPM:2.33

6644

A_BomaMG_comp16229_c1_seq1

409bp

FPKM:1.34 TPM:1.24

6645

A_BomaMG_comp16230_c0_seq1

799bp

PREDICTED:_putative_thiosulfate_sulfurtransferase,_mitochondrial_[Amyelois_transitella]

GO:0003674	F	molecular_function
GO:0004792	F	thiosulfate sulfurtransferase activity
GO:0005575	C	cellular_component
GO:0008150	P	biological_process
GO:0008152	P	metabolic process

FPKM:35.53 TPM:32.90

6646

A_BomaMG_comp16232_c0_seq1

869bp

FPKM:12.36 TPM:11.45

6647

A_BomaMG_comp16233_c0_seq1

758bp

PREDICTED:_neuralized-like_protein_4_[Bombyx_mori]

FPKM:1.64 TPM:1.52

6648

A_BomaMG_comp16233_c1_seq1

297bp

PREDICTED:_neuralized-like_protein_4_[Bombyx_mori]

FPKM:0.87 TPM:0.80

6649

A_BomaMG_comp16234_c0_seq1

366bp

endonuclease-reverse_transcriptase_[Danaus_plexippus]

GO:0000977	F	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006357	P	regulation of transcription by RNA polymerase II
GO:0046872	F	metal ion binding
GO:0046983	F	protein dimerization activity

FPKM:1.65 TPM:1.53

6650

A_BomaMG_comp16234_c1_seq1

783bp

PREDICTED:_uncharacterized_protein_LOC103575560_[Microplitis_demolitor]

GO:0000228	C	nuclear chromosome
GO:0000977	F	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0004803	F	transposase activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006357	P	regulation of transcription by RNA polymerase II
GO:0015629	C	actin cytoskeleton
GO:0046872	F	metal ion binding
GO:0046983	F	protein dimerization activity

FPKM:1.35 TPM:1.25

6651

A_BomaMG_comp16235_c0_seq1

476bp

FPKM:1.61 TPM:1.49

6652

A_BomaMG_comp16235_c1_seq1

563bp

FPKM:1.95 TPM:1.81

6653

A_BomaMG_comp16236_c0_seq1

220bp

hypothetical_protein_EBI_26227_[Enterocytozoon_bieneusi_H348]

FPKM:2.17 TPM:2.01

6654

A_BomaMG_comp16237_c0_seq1

567bp

PREDICTED:_hyaluronidase-like_[Bombyx_mori]

GO:0003824	F	catalytic activity
GO:0004415	F	hyalurononglucosaminidase activity
GO:0005576	C	extracellular region
GO:0005975	P	carbohydrate metabolic process
GO:0006952	P	defense response
GO:0008152	P	metabolic process
GO:0016787	F	hydrolase activity
GO:0016798	F	hydrolase activity, acting on glycosyl bonds