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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6571 A_BomaMG_comp161816_c0_seq1
259bp
FPKM:2.51 TPM:2.32
6572 A_BomaMG_comp16182_c0_seq1
317bp
FPKM:0.75 TPM:0.69
6573 A_BomaMG_comp16183_c0_seq1
1457bp
putative_DNA_repair_protein_xp-e_[Danaus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
FPKM:8.22 TPM:7.61
6574 A_BomaMG_comp16184_c0_seq1
585bp
FPKM:1.60 TPM:1.48
6575 A_BomaMG_comp161851_c0_seq1
1698bp
PREDICTED:_septin_and_tuftelin_interacting_protein_isoform_X2_[Bombyx_mori]
GO:0000390 P spliceosomal complex disassembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004004 F RNA helicase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0071008 C U2-type post-mRNA release spliceosomal complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:1.45 TPM:1.34
6576 A_BomaMG_comp16185_c0_seq1
354bp
PREDICTED:_uncharacterized_protein_LOC106108145_[Papilio_polytes]
FPKM:1.57 TPM:1.45
6577 A_BomaMG_comp16185_c1_seq1
1114bp
PREDICTED:_uncharacterized_protein_LOC106134389_[Amyelois_transitella]
FPKM:1.34 TPM:1.24
6578 A_BomaMG_comp161865_c0_seq1
703bp
FPKM:2.01 TPM:1.86
6579 A_BomaMG_comp16186_c0_seq1
332bp
hypothetical_protein_ADL19_14695,_partial_[Streptomyces_purpurogeneiscleroticus]
FPKM:7.40 TPM:6.86
6580 A_BomaMG_comp16186_c0_seq2
439bp
PREDICTED:_lipoxygenase_homology_domain-containing_protein_1_[Strongylocentrotus_purpuratus]
FPKM:2.24 TPM:2.07
6581 A_BomaMG_comp16187_c0_seq1
207bp
FPKM:2.78 TPM:2.58
6582 A_BomaMG_comp16188_c0_seq1
767bp
FPKM:1.27 TPM:1.18
6583 A_BomaMG_comp16188_c1_seq1
434bp
radical_SAM_superfamily_protein_[Kosakonia_radicincitans]
FPKM:1.21 TPM:1.12
6584 A_BomaMG_comp161898_c0_seq1
235bp
FPKM:1.14 TPM:1.05
6585 A_BomaMG_comp16189_c0_seq1
257bp
FPKM:3.85 TPM:3.57
6586 A_BomaMG_comp16191_c0_seq1
263bp
hypothetical_protein_ALC57_07588_[Trachymyrmex_cornetzi]
FPKM:3.20 TPM:2.96
6587 A_BomaMG_comp16191_c1_seq1
234bp
asparagine_synthase_(glutamine-hydrolyzing)_[Citrobacter_amalonaticus]
FPKM:1.16 TPM:1.07
6588 A_BomaMG_comp16192_c0_seq1
359bp
FPKM:0.76 TPM:0.71
6589 A_BomaMG_comp16192_c1_seq1
357bp
FPKM:1.35 TPM:1.25
6590 A_BomaMG_comp16193_c0_seq1
463bp
hypothetical_protein_KGM_03541_[Danaus_plexippus]
FPKM:3.38 TPM:3.13
6591 A_BomaMG_comp16193_c0_seq2
666bp
PREDICTED:_uncharacterized_protein_LOC101744958_isoform_X1_[Bombyx_mori]
FPKM:1.61 TPM:1.49
6592 A_BomaMG_comp161943_c0_seq1
291bp
FPKM:1.83 TPM:1.69
6593 A_BomaMG_comp16194_c0_seq1
1026bp
PREDICTED:_GDNF-inducible_zinc_finger_protein_1-like_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000278 P mitotic cell cycle
GO:0000976 F transcription cis-regulatory region binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051567 P histone H3-K9 methylation
GO:0070491 F DNA-binding transcription factor binding
FPKM:1.48 TPM:1.37
6594 A_BomaMG_comp16194_c1_seq1
403bp
PREDICTED:_GDNF-inducible_zinc_finger_protein_1-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0071333 P cellular response to glucose stimulus
FPKM:1.38 TPM:1.28
6595 A_BomaMG_comp16196_c0_seq1
229bp
Pc21g00640_[Penicillium_rubens_Wisconsin_54-1255]
FPKM:0.00 TPM:0.00
6596 A_BomaMG_comp161984_c0_seq1
652bp
PREDICTED:_Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000403 F Y-form DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009378 F four-way junction helicase activity
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
FPKM:0.00 TPM:0.00
6597 A_BomaMG_comp161984_c0_seq2
651bp
PREDICTED:_Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000403 F Y-form DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009378 F four-way junction helicase activity
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
FPKM:2.16 TPM:2.00
6598 A_BomaMG_comp16198_c0_seq1
330bp
glutathione_S-transferase_sigma_1_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
FPKM:3.64 TPM:3.37
6599 A_BomaMG_comp16199_c0_seq1
231bp
FPKM:1.21 TPM:1.12
6600 A_BomaMG_comp16199_c1_seq1
589bp
FPKM:1.56 TPM:1.44
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