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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6481 A_BomaMG_comp161191_c0_seq1
340bp
FPKM:2.13 TPM:1.97
6482 A_BomaMG_comp161194_c0_seq1
913bp
PREDICTED:_zinc_finger_FYVE_domain-containing_protein_26_homolog_isoform_X1_[Bombyx_mori]
GO:0046872 F metal ion binding
FPKM:1.94 TPM:1.80
6483 A_BomaMG_comp16119_c0_seq1
1407bp
PREDICTED:_DNA_polymerase_theta-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0071897 P DNA biosynthetic process
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
FPKM:1.68 TPM:1.56
6484 A_BomaMG_comp16119_c1_seq1
1201bp
PREDICTED:_DNA_polymerase_theta-like_[Bombyx_mori]
FPKM:1.13 TPM:1.05
6485 A_BomaMG_comp16120_c0_seq1
307bp
PREDICTED:_nesprin-1-like_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:1.61 TPM:1.49
6486 A_BomaMG_comp16120_c1_seq1
609bp
PREDICTED:_nesprin-1-like_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:1.27 TPM:1.17
6487 A_BomaMG_comp16121_c0_seq1
275bp
hypothetical_protein_AMJ40_04685,_partial_[candidate_division_TA06_bacterium_DG_26]
FPKM:4.24 TPM:3.92
6488 A_BomaMG_comp16122_c0_seq1
831bp
FPKM:2.55 TPM:2.37
6489 A_BomaMG_comp16123_c0_seq1
446bp
PREDICTED:_trimethylguanosine_synthase_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0009452 P 7-methylguanosine RNA capping
GO:0015030 C Cajal body
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0036261 P 7-methylguanosine cap hypermethylation
GO:0071164 F RNA trimethylguanosine synthase activity
FPKM:1.79 TPM:1.66
6490 A_BomaMG_comp16123_c1_seq1
312bp
PREDICTED:_trimethylguanosine_synthase_[Bombyx_mori]
GO:0001510 P RNA methylation
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0009452 P 7-methylguanosine RNA capping
GO:0015030 C Cajal body
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0036261 P 7-methylguanosine cap hypermethylation
GO:0071164 F RNA trimethylguanosine synthase activity
FPKM:1.55 TPM:1.43
6491 A_BomaMG_comp16125_c0_seq1
667bp
PREDICTED:_Fanconi_anemia,_complementation_group_I_isoform_X3_[Bombyx_mori]
FPKM:1.33 TPM:1.23
6492 A_BomaMG_comp16126_c0_seq1
643bp
PREDICTED:_zinc_finger_protein_35_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0045111 C intermediate filament cytoskeleton
GO:0046872 F metal ion binding
GO:0051607 P defense response to virus
FPKM:2.13 TPM:1.97
6493 A_BomaMG_comp16127_c0_seq1
766bp
FPKM:2.03 TPM:1.88
6494 A_BomaMG_comp161282_c0_seq1
247bp
FPKM:0.97 TPM:0.90
6495 A_BomaMG_comp161288_c0_seq1
257bp
PREDICTED:_apoptosis-inducing_factor_1,_mitochondrial-like_[Bombyx_mori]
GO:0002931 P response to ischemia
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005758 C mitochondrial intermembrane space
GO:0005829 C cytosol
GO:0006308 P DNA catabolic process
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0009055 F electron transfer activity
GO:0009636 P response to toxic substance
GO:0010942 P positive regulation of cell death
GO:0016020 C membrane
GO:0016174 F NAD(P)H oxidase H2O2-forming activity
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0030182 P neuron differentiation
GO:0030261 P chromosome condensation
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0043065 P positive regulation of apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045454 P cell redox homeostasis
GO:0046983 F protein dimerization activity
GO:0048471 C perinuclear region of cytoplasm
GO:0050660 F flavin adenine dinucleotide binding
GO:0051402 P neuron apoptotic process
GO:0055114 P obsolete oxidation-reduction process
GO:0070059 P intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress
GO:0070301 P cellular response to hydrogen peroxide
GO:0071392 P cellular response to estradiol stimulus
GO:0071732 P cellular response to nitric oxide
GO:0071949 F FAD binding
GO:0090650 P cellular response to oxygen-glucose deprivation
GO:1902065 P response to L-glutamate
GO:1902510 P regulation of apoptotic DNA fragmentation
GO:1904045 P cellular response to aldosterone
FPKM:4.71 TPM:4.36
6496 A_BomaMG_comp16128_c0_seq1
540bp
FPKM:1.80 TPM:1.66
6497 A_BomaMG_comp161304_c0_seq1
324bp
FPKM:3.08 TPM:2.85
6498 A_BomaMG_comp16130_c0_seq1
574bp
PREDICTED:_uncharacterized_protein_LOC101746247_isoform_X2_[Bombyx_mori]
FPKM:2.07 TPM:1.92
6499 A_BomaMG_comp16130_c1_seq1
220bp
PREDICTED:_uncharacterized_protein_LOC106141134,_partial_[Amyelois_transitella]
FPKM:2.89 TPM:2.68
6500 A_BomaMG_comp16131_c0_seq1
856bp
PREDICTED:_lysosome-associated_membrane_glycoprotein_1-like_[Plutella_xylostella]
FPKM:62.44 TPM:57.82
6501 A_BomaMG_comp16131_c1_seq1
251bp
FPKM:33.09 TPM:30.64
6502 A_BomaMG_comp16132_c0_seq1
531bp
FPKM:1.94 TPM:1.80
6503 A_BomaMG_comp16133_c0_seq1
337bp
FPKM:1.30 TPM:1.21
6504 A_BomaMG_comp16134_c0_seq1
456bp
FPKM:2.96 TPM:2.75
6505 A_BomaMG_comp16135_c0_seq1
392bp
PREDICTED:_zinc_finger_protein_OZF-like_[Plutella_xylostella]
FPKM:3.06 TPM:2.83
6506 A_BomaMG_comp161362_c0_seq1
527bp
PREDICTED:_uncharacterized_protein_P25A2.03_[Amyelois_transitella]
FPKM:2.06 TPM:1.91
6507 A_BomaMG_comp16136_c0_seq1
686bp
PREDICTED:_low-density_lipoprotein_receptor-related_protein_1B-like,_partial_[Latimeria_chalumnae]
FPKM:2.08 TPM:1.93
6508 A_BomaMG_comp16136_c1_seq1
692bp
FPKM:1.26 TPM:1.17
6509 A_BomaMG_comp16137_c0_seq1
1104bp
PREDICTED:_CCAAT/enhancer-binding_protein_zeta_[Amyelois_transitella]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
FPKM:2.24 TPM:2.07
6510 A_BomaMG_comp161383_c0_seq1
671bp
FPKM:2.28 TPM:2.11
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