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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5461 A_BomaMG_comp15231_c1_seq1
611bp
PREDICTED:_zinc_finger_protein_600-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006359 P regulation of transcription by RNA polymerase III
GO:0006366 P transcription by RNA polymerase II
GO:0006383 P transcription by RNA polymerase III
GO:0046872 F metal ion binding
FPKM:0.79 TPM:0.73
5462 A_BomaMG_comp15232_c1_seq1
248bp
acyl-CoA_dehydrogenase_[Mycobacterium_aurum]
FPKM:2.86 TPM:2.65
5463 A_BomaMG_comp15233_c0_seq1
339bp
PREDICTED:_ras_GTPase-activating_protein_1_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0001570 P vasculogenesis
GO:0001953 P negative regulation of cell-matrix adhesion
GO:0005096 F GTPase activator activity
GO:0005102 F signaling receptor binding
GO:0005737 C cytoplasm
GO:0007162 P negative regulation of cell adhesion
GO:0007165 P signal transduction
GO:0009790 P embryo development
GO:0030833 P regulation of actin filament polymerization
GO:0031235 C intrinsic component of the cytoplasmic side of the plasma membrane
GO:0043087 P regulation of GTPase activity
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0051020 F GTPase binding
FPKM:2.57 TPM:2.38
5464 A_BomaMG_comp15234_c0_seq1
282bp
hypothetical_protein_[Flavobacterium_psychrophilum]
FPKM:0.99 TPM:0.92
5465 A_BomaMG_comp15235_c0_seq1
229bp
FPKM:1.87 TPM:1.73
5466 A_BomaMG_comp15235_c1_seq1
240bp
PREDICTED:_sulfotransferase_1C2_isoform_X1_[Monodelphis_domestica]
FPKM:0.00 TPM:0.00
5467 A_BomaMG_comp15236_c0_seq1
346bp
reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:2.06 TPM:1.90
5468 A_BomaMG_comp15237_c0_seq1
411bp
FPKM:0.89 TPM:0.82
5469 A_BomaMG_comp15238_c0_seq1
267bp
PREDICTED:_uncharacterized_protein_LOC106111311_[Papilio_polytes]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007416 P synapse assembly
GO:0007611 P learning or memory
GO:0007613 P memory
GO:0007616 P long-term memory
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0040011 P locomotion
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0050773 P regulation of dendrite development
FPKM:1.53 TPM:1.42
5470 A_BomaMG_comp15239_c0_seq1
250bp
MULTISPECIES:_hypothetical_protein_[Rhizobium]
FPKM:2.79 TPM:2.59
5471 A_BomaMG_comp15240_c0_seq1
237bp
FPKM:3.87 TPM:3.59
5472 A_BomaMG_comp152416_c0_seq1
237bp
ATP-binding_cassette_sub-family_A_ABCA1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005815 C microtubule organizing center
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0016887 F ATP hydrolysis activity
GO:0032383 P regulation of intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0048545 P response to steroid hormone
GO:0055085 P transmembrane transport
FPKM:1.66 TPM:1.54
5473 A_BomaMG_comp15241_c0_seq1
205bp
cyclic_nucleotide-binding_protein_[Tenacibaculum_ovolyticum]
FPKM:0.00 TPM:0.00
5474 A_BomaMG_comp15241_c1_seq1
607bp
FPKM:1.51 TPM:1.40
5475 A_BomaMG_comp152440_c0_seq1
295bp
FPKM:2.06 TPM:1.91
5476 A_BomaMG_comp152444_c0_seq1
428bp
PREDICTED:_solute_carrier_family_12_member_9_isoform_X2_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:3.44 TPM:3.18
5477 A_BomaMG_comp15245_c0_seq1
211bp
glutamate:sodium_symporter_[Clostridiales_bacterium_SIT13]
FPKM:1.71 TPM:1.58
5478 A_BomaMG_comp15246_c0_seq1
216bp
hypothetical_protein_[Bacillus_cereus]
FPKM:2.33 TPM:2.16
5479 A_BomaMG_comp15246_c1_seq1
262bp
FPKM:3.23 TPM:3.00
5480 A_BomaMG_comp15247_c0_seq1
228bp
FPKM:2.53 TPM:2.35
5481 A_BomaMG_comp15248_c0_seq1
245bp
FPKM:0.00 TPM:0.00
5482 A_BomaMG_comp15249_c0_seq1
302bp
PREDICTED:_signal-induced_proliferation-associated_1-like_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005096 F GTPase activator activity
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0031532 P actin cytoskeleton reorganization
GO:0043005 C neuron projection
GO:0043087 P regulation of GTPase activity
GO:0043197 C dendritic spine
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046875 F ephrin receptor binding
GO:0048013 P ephrin receptor signaling pathway
GO:0048167 P regulation of synaptic plasticity
GO:0048814 P regulation of dendrite morphogenesis
GO:0050770 P regulation of axonogenesis
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0061001 P regulation of dendritic spine morphogenesis
GO:0090630 P activation of GTPase activity
FPKM:1.67 TPM:1.55
5483 A_BomaMG_comp1524_c0_seq1
240bp
PREDICTED:_importin-11_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0042991 P obsolete transcription factor import into nucleus
FPKM:1.59 TPM:1.47
5484 A_BomaMG_comp15250_c0_seq1
670bp
FPKM:1.11 TPM:1.03
5485 A_BomaMG_comp15251_c0_seq1
577bp
PREDICTED:_uncharacterized_protein_LOC105841570_[Bombyx_mori]
FPKM:1.80 TPM:1.67
5486 A_BomaMG_comp15252_c0_seq1
359bp
FPKM:1.72 TPM:1.59
5487 A_BomaMG_comp152546_c0_seq1
463bp
PREDICTED:_intersectin-1_isoform_X3_[Bombyx_mori]
FPKM:2.53 TPM:2.34
5488 A_BomaMG_comp15254_c0_seq1
337bp
FPKM:1.74 TPM:1.61
5489 A_BomaMG_comp15255_c0_seq1
214bp
FPKM:2.42 TPM:2.24
5490 A_BomaMG_comp152560_c0_seq1
1397bp
PREDICTED:_transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000125 C SAGA complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:1904837 P beta-catenin-TCF complex assembly
FPKM:1.84 TPM:1.70
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