SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/50247
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
211 A_SariMSG_c10297_g1_i1
227bp
probable_nucleoporin_Nup54_isoform_X1_[Bombyx_mori]
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0006605 P protein targeting
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031965 C nuclear membrane
GO:0036228 P protein localization to nuclear inner membrane
GO:0042306 P regulation of protein import into nucleus
GO:0043234 C protein-containing complex
GO:0044613 C nuclear pore central transport channel
GO:0051028 P mRNA transport
GO:0051260 P protein homooligomerization
GO:0051290 P protein heterotetramerization
GO:0051291 P protein heterooligomerization
GO:0070208 P protein heterotrimerization
FPKM:1.58 TPM:1.01
212 A_SariMSG_c1029_g1_i1
339bp
PREDICTED:_nose_resistant_to_fluoxetine_protein_6-like_[Plutella_xylostella]
FPKM:2.29 TPM:1.46
213 A_SariMSG_c102_g1_i1
294bp
uncharacterized_protein_LOC101738890_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.01 TPM:1.92
214 A_SariMSG_c10301_g1_i1
378bp
putative_XK-related_protein_6_[Danaus_plexippus_plexippus]
FPKM:4.08 TPM:2.60
215 A_SariMSG_c10302_g1_i1
361bp
ubiquitin_carboxyl-terminal_hydrolase_32_[Helicoverpa_armigera]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
FPKM:3.23 TPM:2.06
216 A_SariMSG_c10305_g1_i1
394bp
gamma-glutamyltranspeptidase_1_isoform_X3_[Bombyx_mori]
GO:0002682 P regulation of immune system process
GO:0003840 F obsolete gamma-glutamyltransferase activity
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006508 P proteolysis
GO:0006536 P glutamate metabolic process
GO:0006749 P glutathione metabolic process
GO:0006750 P glutathione biosynthetic process
GO:0006751 P glutathione catabolic process
GO:0007283 P spermatogenesis
GO:0008233 F peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016787 F hydrolase activity
GO:0019344 P cysteine biosynthetic process
GO:0019370 P leukotriene biosynthetic process
GO:0031638 P zymogen activation
GO:0031988 C vesicle
GO:0036374 F glutathione hydrolase activity
GO:0050727 P regulation of inflammatory response
GO:0060427 P lung connective tissue development
GO:0070062 C extracellular exosome
GO:0071260 P cellular response to mechanical stimulus
FPKM:1.27 TPM:0.81
217 A_SariMSG_c10306_g1_i1
210bp
FPKM:0.00 TPM:0.00
218 A_SariMSG_c10307_g1_i1
216bp
FPKM:3.63 TPM:2.32
219 A_SariMSG_c10308_g1_i1
263bp
UHRF1-binding_protein_1-like_[Bombyx_mori]
FPKM:6.01 TPM:3.83
220 A_SariMSG_c10309_g1_i1
220bp
FPKM:6.03 TPM:3.85
221 A_SariMSG_c10311_g1_i1
219bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.75 TPM:1.11
222 A_SariMSG_c10312_g1_i1
385bp
PREDICTED:_uncharacterized_protein_LOC106102709_[Papilio_polytes]
FPKM:2.64 TPM:1.68
223 A_SariMSG_c10315_g1_i1
405bp
FPKM:2.67 TPM:1.71
224 A_SariMSG_c10317_g1_i1
261bp
PREDICTED:_ras-related_protein_Rab-14_[Amyelois_transitella]
FPKM:10.01 TPM:6.39
225 A_SariMSG_c10319_g1_i1
899bp
PREDICTED:_39S_ribosomal_protein_L15,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:29.51 TPM:18.84
226 A_SariMSG_c10319_g1_i2
997bp
PREDICTED:_39S_ribosomal_protein_L15,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:3.76 TPM:2.40
227 A_SariMSG_c10320_g1_i1
290bp
FPKM:2.65 TPM:1.69
228 A_SariMSG_c10321_g1_i1
271bp
FPKM:2.55 TPM:1.63
229 A_SariMSG_c10322_g1_i1
569bp
neuralized-like_protein_4_[Bombyx_mori]
FPKM:2.81 TPM:1.79
230 A_SariMSG_c10324_g1_i1
388bp
FPKM:1.82 TPM:1.16
231 A_SariMSG_c10325_g1_i1
205bp
FPKM:13.86 TPM:8.85
232 A_SariMSG_c10327_g1_i1
247bp
FPKM:1.27 TPM:0.81
233 A_SariMSG_c10328_g1_i1
496bp
mediator_of_RNA_polymerase_II_transcription_subunit_24_[Helicoverpa_armigera]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:2.51 TPM:1.60
234 A_SariMSG_c10330_g1_i1
462bp
PREDICTED:_cell_cycle_checkpoint_protein_RAD1_[Amyelois_transitella]
FPKM:2.58 TPM:1.65
235 A_SariMSG_c10331_g1_i1
480bp
PREDICTED:_dnaJ_homolog_subfamily_C_member_28_[Amyelois_transitella]
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005515 F protein binding
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
FPKM:2.44 TPM:1.56
236 A_SariMSG_c10332_g1_i1
232bp
FPKM:3.72 TPM:2.37
237 A_SariMSG_c10334_g1_i1
547bp
Uncharacterized_protein_OBRU01_09865_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0043406 P positive regulation of MAP kinase activity
FPKM:1.09 TPM:0.70
238 A_SariMSG_c10334_g1_i2
385bp
Uncharacterized_protein_OBRU01_09865_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016020 C membrane
FPKM:0.80 TPM:0.51
239 A_SariMSG_c10335_g1_i1
439bp
FPKM:1.29 TPM:0.82
240 A_SariMSG_c10336_g1_i1
792bp
uncharacterized_protein_LOC110373925_[Helicoverpa_armigera]
FPKM:1.54 TPM:0.99
previous next from show/50247

- SilkBase 1999-2023 -