SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/68433
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4261 A_SariASG_c17131_g1_i1
236bp
FPKM:0.55 TPM:0.53
4262 A_SariASG_c17132_g1_i1
1713bp
Tubulin_alpha-1_chain_[Melipona_quadrifasciata]
GO:0000166 F nucleotide binding
GO:0000235 C astral microtubule
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0007052 P mitotic spindle organization
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0008152 P metabolic process
GO:0019730 P antimicrobial humoral response
GO:0045298 C tubulin complex
GO:0048471 C perinuclear region of cytoplasm
FPKM:3141.27 TPM:3041.98
4263 A_SariASG_c17133_g1_i1
398bp
ubiquitin-conjugating_enzyme_E2Q-like_protein_CG4502_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
FPKM:1.52 TPM:1.47
4264 A_SariASG_c17133_g1_i2
262bp
hypothetical_protein_KGM_211121_[Danaus_plexippus_plexippus]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
FPKM:0.00 TPM:0.00
4265 A_SariASG_c17135_g1_i1
297bp
FPKM:0.97 TPM:0.93
4266 A_SariASG_c17135_g2_i1
242bp
FPKM:6.14 TPM:5.95
4267 A_SariASG_c17136_g1_i1
240bp
FPKM:0.00 TPM:0.00
4268 A_SariASG_c17139_g1_i1
643bp
FPKM:1.05 TPM:1.01
4269 A_SariASG_c17141_g1_i1
308bp
FPKM:10.17 TPM:9.85
4270 A_SariASG_c17142_g1_i1
251bp
FPKM:0.93 TPM:0.91
4271 A_SariASG_c17143_g1_i1
361bp
FPKM:1.56 TPM:1.51
4272 A_SariASG_c17145_g1_i1
205bp
FPKM:8.19 TPM:7.93
4273 A_SariASG_c17146_g1_i1
397bp
PREDICTED:_60S_ribosomal_protein_L21-like_[Chrysochloris_asiatica]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0016020 C membrane
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
FPKM:3.43 TPM:3.32
4274 A_SariASG_c17147_g1_i1
4169bp
PREDICTED:_cullin-associated_NEDD8-dissociated_protein_1_[Amyelois_transitella]
GO:0000151 C ubiquitin ligase complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0010265 P SCF complex assembly
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0017025 F TBP-class protein binding
GO:0030154 P cell differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0043086 P negative regulation of catalytic activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045899 P positive regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0070062 C extracellular exosome
FPKM:40.35 TPM:39.08
4275 A_SariASG_c17148_g1_i1
506bp
FPKM:2.64 TPM:2.55
4276 A_SariASG_c1714_g1_i1
234bp
FPKM:1.12 TPM:1.08
4277 A_SariASG_c17150_g1_i1
233bp
FPKM:0.56 TPM:0.55
4278 A_SariASG_c17152_g1_i1
297bp
PREDICTED:_zinc_finger_protein_649-like_[Amyelois_transitella]
FPKM:1.61 TPM:1.56
4279 A_SariASG_c17153_g1_i1
332bp
uncharacterized_protein_Dmoj_GI25655,_isoform_B_[Drosophila_mojavensis]
FPKM:3.37 TPM:3.27
4280 A_SariASG_c17156_g1_i1
236bp
FPKM:3.27 TPM:3.17
4281 A_SariASG_c17158_g1_i1
554bp
FPKM:1.39 TPM:1.35
4282 A_SariASG_c17159_g1_i1
360bp
FPKM:19.76 TPM:19.13
4283 A_SariASG_c17160_g1_i1
249bp
uncharacterized_protein_LOC105687471_[Athalia_rosae]
FPKM:2.38 TPM:2.31
4284 A_SariASG_c17162_g1_i1
253bp
hypothetical_protein_ALC57_16454_[Trachymyrmex_cornetzi]
FPKM:7.33 TPM:7.10
4285 A_SariASG_c17163_g1_i1
356bp
FPKM:0.46 TPM:0.44
4286 A_SariASG_c17165_g1_i1
213bp
FPKM:3.64 TPM:3.52
4287 A_SariASG_c17166_g1_i1
468bp
ribosomal_protein_S17_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:855.45 TPM:828.41
4288 A_SariASG_c17167_g1_i1
536bp
putative_sulfiredoxin_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006979 P response to oxidative stress
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0016667 F oxidoreductase activity, acting on a sulfur group of donors
GO:0032542 F sulfiredoxin activity
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:32.95 TPM:31.91
4289 A_SariASG_c17168_g1_i1
1333bp
PREDICTED:_cold_shock_domain-containing_protein_CG9705_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0048813 P dendrite morphogenesis
FPKM:33.32 TPM:32.26
4290 A_SariASG_c17169_g1_i1
3126bp
Profilin_[Operophtera_brumata]
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
FPKM:241.32 TPM:233.69
previous next from show/68433

- SilkBase 1999-2023 -