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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

1261

A_SariASG_c12240_g1_i2

567bp

PREDICTED:_uncharacterized_protein_LOC105381048_[Plutella_xylostella]

GO:0000166	F	nucleotide binding
GO:0000775	C	chromosome, centromeric region
GO:0000793	C	condensed chromosome
GO:0005515	F	protein binding
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005694	C	chromosome
GO:0005730	C	nucleolus
GO:0005737	C	cytoplasm
GO:0006259	P	DNA metabolic process
GO:0007049	P	cell cycle
GO:0007126	P	meiotic cell cycle
GO:0008022	F	protein C-terminus binding
GO:0008283	P	cell population proliferation
GO:0014070	P	response to organic cyclic compound
GO:0016020	C	membrane
GO:0030212	P	hyaluronan metabolic process
GO:0031100	P	animal organ regeneration
GO:0034605	P	cellular response to heat
GO:0044822	F	RNA binding
GO:0072574	P	hepatocyte proliferation
GO:1990705	P	cholangiocyte proliferation

FPKM:7.24 TPM:7.02

1262

A_SariASG_c12241_g1_i1

1051bp

FPKM:46.83 TPM:45.35

1263

A_SariASG_c12243_g1_i1

239bp

pol,_partial_[Mus_musculus]

GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003824	F	catalytic activity
GO:0003887	F	DNA-directed DNA polymerase activity
GO:0003964	F	RNA-directed DNA polymerase activity
GO:0004518	F	nuclease activity
GO:0004519	F	endonuclease activity
GO:0004523	F	RNA-DNA hybrid ribonuclease activity
GO:0006278	P	RNA-dependent DNA biosynthetic process
GO:0006310	P	DNA recombination
GO:0008152	P	metabolic process
GO:0008270	F	zinc ion binding
GO:0015074	P	DNA integration
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity
GO:0016787	F	hydrolase activity
GO:0046718	P	viral entry into host cell
GO:0046872	F	metal ion binding
GO:0071897	P	DNA biosynthetic process
GO:0075713	P	establishment of integrated proviral latency
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis
GO:0090502	P	RNA phosphodiester bond hydrolysis, endonucleolytic

FPKM:1.06 TPM:1.02

1264

A_SariASG_c12244_g1_i1

594bp

FPKM:2.85 TPM:2.76

1265

A_SariASG_c12245_g1_i1

223bp

FPKM:1.91 TPM:1.85

1266

A_SariASG_c12246_g1_i1

423bp

FPKM:1.21 TPM:1.17

1267

A_SariASG_c12248_g1_i1

476bp

FPKM:4.03 TPM:3.91

1268

A_SariASG_c12249_g1_i1

379bp

DNA-directed_RNA_polymerase_II_subunit_RPB1_[Papilio_xuthus]

GO:0001725	C	stress fiber
GO:0001952	P	regulation of cell-matrix adhesion
GO:0003779	F	actin binding
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005856	C	cytoskeleton
GO:0005915	C	zonula adherens
GO:0005925	C	focal adhesion
GO:0005927	C	muscle tendon junction
GO:0008270	F	zinc ion binding
GO:0015629	C	actin cytoskeleton
GO:0016323	C	basolateral plasma membrane
GO:0030018	C	Z disc
GO:0030239	P	myofibril assembly
GO:0031252	C	cell leading edge
GO:0045177	C	apical part of cell
GO:0045178	C	basal part of cell
GO:0046872	F	metal ion binding
GO:0051371	F	muscle alpha-actinin binding
GO:0061061	P	muscle structure development

FPKM:2.67 TPM:2.59

1269

A_SariASG_c12251_g1_i1

335bp

PREDICTED:_irregular_chiasm_C-roughest_protein-like_[Papilio_polytes]

GO:0001745	P	compound eye morphogenesis
GO:0005515	F	protein binding
GO:0005886	C	plasma membrane
GO:0005913	C	adherens junction
GO:0007155	P	cell adhesion
GO:0007156	P	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409	P	axonogenesis
GO:0007520	P	myoblast fusion
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016202	P	regulation of striated muscle tissue development
GO:0030165	F	PDZ domain binding
GO:0042802	F	identical protein binding
GO:0045177	C	apical part of cell
GO:0046331	P	lateral inhibition
GO:0046666	P	retinal cell programmed cell death
GO:0046667	P	compound eye retinal cell programmed cell death
GO:0048749	P	compound eye development

FPKM:2.30 TPM:2.22

1270

A_SariASG_c12252_g1_i1

440bp

FPKM:3.08 TPM:2.98

1271

A_SariASG_c12253_g1_i1

401bp

FPKM:2.06 TPM:2.00

1272

A_SariASG_c12259_g1_i1

434bp

MAU2_chromatid_cohesion_factor_protein_[Danaus_plexippus_plexippus]

FPKM:2.15 TPM:2.08

1273

A_SariASG_c12260_g1_i1

263bp

FPKM:3.35 TPM:3.24

1274

A_SariASG_c12261_g1_i1

252bp

unnamed_protein_product,_partial_[Mus_musculus]

GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006281	P	DNA repair
GO:0006974	P	cellular response to DNA damage stimulus
GO:0016567	P	protein ubiquitination
GO:0031464	C	Cul4A-RING E3 ubiquitin ligase complex
GO:0031465	C	Cul4B-RING E3 ubiquitin ligase complex
GO:0043161	P	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0080008	C	Cul4-RING E3 ubiquitin ligase complex

FPKM:2.31 TPM:2.24

1275

A_SariASG_c12262_g1_i1

260bp

FPKM:2.15 TPM:2.08

1276

A_SariASG_c12263_g1_i1

360bp

ORF_A_span_522-1895;_first_start_codon_at_663_[Autographa_californica_nucleopolyhedrovirus]

FPKM:1.57 TPM:1.52

1277

A_SariASG_c12264_g1_i1

231bp

FPKM:1.73 TPM:1.68

1278

A_SariASG_c12265_g1_i1

244bp

FPKM:3.51 TPM:3.40

1279

A_SariASG_c12266_g1_i1

558bp

FPKM:4.83 TPM:4.68

1280

A_SariASG_c12270_g1_i1

296bp

FPKM:0.97 TPM:0.94

1281

A_SariASG_c12271_g1_i1

207bp

FPKM:0.00 TPM:0.00

1282

A_SariASG_c12271_g1_i2

225bp

FPKM:1.86 TPM:1.80

1283

A_SariASG_c12273_g1_i1

369bp

FPKM:0.86 TPM:0.83

1284

A_SariASG_c12274_g1_i1

1272bp

putative_tyrosyl-tRNA_synthetase_cytoplasmic_[Danaus_plexippus_plexippus]

GO:0000049	F	tRNA binding
GO:0000166	F	nucleotide binding
GO:0003723	F	RNA binding
GO:0004812	F	aminoacyl-tRNA ligase activity
GO:0004831	F	tyrosine-tRNA ligase activity
GO:0005524	F	ATP binding
GO:0005737	C	cytoplasm
GO:0006412	P	translation
GO:0006418	P	tRNA aminoacylation for protein translation
GO:0006437	P	tyrosyl-tRNA aminoacylation
GO:0016874	F	ligase activity

FPKM:55.22 TPM:53.47

1285

A_SariASG_c12275_g1_i1

242bp

zinc_finger_protein_395_[Helicoverpa_armigera]

GO:0001158	F	cis-regulatory region sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription by RNA polymerase II
GO:0046872	F	metal ion binding