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Last updated: 2022/11/18

ORF from Assembled RNA_seq Entry

NameO_BomoOtmSK12672_3prime_partial:A_BomoOtmSK_comp14396_c0_seq1
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		transcription_elongation_factor_SPT6_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0030707 P ovarian follicle cell development
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
GO:0035327 C euchromatin
GO:0035363 C histone locus body
RNA-seq EntryA_BomoOtmSK_comp14396_c0_seq1
Sequence
(Amino Acid)
MSDFLESEAEESELDSEAEEQPAERKKHKRKAVQSDDEDEEEEDDEERLREELKDLIDDA
PIEESGSDGEDSDASVGPKKRKKSDDELDDRLEDEDYDLIEENLGVKVARNKFKRLRRLE
DDDSDNEGADDPDLEREVIAEKLFVGGSDEEDENRSDSAAPRGDVEYDDDNEELESDADD
FIVDDDGRPIAERKKKRKPIFTDASLQEGQDIFGVDFDYDEFEKYGEEDYEDEDEEDLDE
YIEDDEEEGERRRTKKGKAKRPSKKSIFEIYEPSELKRSHFTDLDNEIRKTDVPERMQTR
EVPITPVEEGSNELEEEAEWIYKQAFLKPSVSKADAQDARERTRRGSSTITKIRQALDFM
RNQTLEVPFIAFYRKEYVEPELSINDLWKVYKYDAKWCQLKQRKENLLKLFENMRDYQLD
KVMENPDAPIPENMRLVKDEDIERLKSVQTPEELRDVHAHFLLYYSCELPEMQRVQRIKE
RKKELEERKKLAREEAEKNGEDAEEAAAAIEAIELDEEDLTDIKYAAKSGPYELCRKAGI
EPLVKKFGLTPEQFAENVRDNYQRHEVEQQPVAPLEAAAEYVGNIGSAAEVVRRAVYMCG
VQLAREPLLRATLRDALRERATVSVKPTAKGIKEIDENHACYSLKYLKKKPVRDITGEQF
LKLTMAAEDKLLVVTISEQIEGNTSPSYLEELKQLYQKDEFAATVQAWNELRSEAVTIAL
TKIVMPELRRELHAVLLQESKDYVLKCCRRRLYDWLKVAPYESRISDDDDEWDASNGVRV
MSVAYVPDRAHSAFACIVGPGGEVADHLRLPHLLYRRNAWDALERRNKDADMTALRRFIC
RKKPHVIVIGGESREALNVKADISDCVQQLVEDEQFPRIPIEIADNHFSKIYSNSIRGRN
DFREYPDILRQAICQGRLLQDPLMEISQLCGPDEEILCLRYHPLQDQIAKDDLLEGIELE
FVNRVNEVGVDVNEAVLTGRGTELLQYVCGLGPRKAQALIKLFKQTNQKLENRTQLVTVC
HMGPKVFINCSGFIRIDTNSLGDSTEAYIEVLDGSRVHPETYEWARKMAVDALEYEDEDA
NPAGALEEILEAPERLKDLDLDAFAEELERQGFGNKSITLYDIRAELNSRYKDLRVSYRS
PTPEELFDILTKESPDTFYVGKMVLASVIGITHRKPQREMLDQATPVRNDETGLWQCPFC
FKNDFPELSEVWSHFDAGACPGQATGVRIRLDNGLSGYIHIKNLSDRHVTDPTERVRIGQ
TVHCRVIKIDVERFSVDCTSKSSDLLDKNNEWKPPKDPYYDQETEDKDIRKEKDAKQNKD
RMQYVKRVIVHPAFHNISFAEAEKLMDKMAQGEVIVRPSSKGSDHLTVTWKVTDGIYQHI
DVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGHARDLIAYKYYKPLGGIRDK
AEEILKEEKAKNPNKIHYVISASKNYPGRFLLSYLPRARCTHEYVSVSPDGYKFRQRMFD
SLSGLLKWFKEHFREPPPSGTPAQRAAAAR
(509 a.a.)

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