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Last updated: 2022/11/18

ORF from Assembled RNA_seq Entry

NameO_BomoMSG20797_5prime_partial:A_BomoMSG_c26768_g1_i6
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X2_[Bombyx_mori]
Ontology
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
RNA-seq EntryA_BomoMSG_c26768_g1_i6
Sequence
(Amino Acid)
ALPISWPSQEKLTVSPTSLSIDEGQSSRAVCTGTQGVPAGSIEWIRQDNAPFVANVRSDN
GVLYIEYARPENDGIYVCQSSSSNVSPQSIIITIIPTYSPDPAKESNISISVDSLKVPAG
GSGKIDCNPDGTILPTIKWSKHGGEFGSETSQRGNTLIINNAKEDDQGYYLCEGIVNGAT
IASSYVYVEIERRDPPQVDIWPQGERAVTLGTEYELICRVLGGVPEPDVMWSRGGSRPLS
SYVHIRPQNTLKFDHVDVNDEGEYFCTATNVAGTATARSVIKVRSPPVITITPASFLEAP
LGSSVTVECRADGYPLPMVSIKTSADLRELVRPTPSLAALKIPSIAERDDGDYICTATSA
AGTIEEPFAIRVSRGDIGVEYEFGGSGDDEFPVDYNPNNPTGRSDTLIAYENEPEITIFC
NSSEGFNARWDRGDRQSLQRNAYQVDSRLIIRGVSKSDSGLYVCSLYNRYTGEVVKANYT
NLQVVTRPKITLRPANQTVRPGQSLTVECLVEGDEILDVTWRYDREPSRRVEIRGPVLVF
NNIEVEDAGIYYCIARSRYGNDTATANVIVTENTDRPTVESHNNEQYAHSGAAVHLGCNV
SQPNLRIYWTKDGRPVPRSRQKTDGSLFIKVAQKSDSGRYECFVRDQYGRRSSNYVNLHI
EGARDANSASLVYIDQPRRKFRVSENVEVICKGRSRDVTFKWERPDTNLYLVTNPFGGGS
RLLINSVQESDAGVYRCIGTDPFGISSYDDFVLEIEPGSGNAVYPGNRDLPVTHYSARLR
EAVDMPCNHDLNEPVIIEWKREYSPLPAEVRSNQPILHLESVTEADAGIYVCRVSNQEVT
VTAKAILRVIGVVPLFKGKSWLSLPPLKDAYRQFDIEVYFKPTDLNGLILYNSQNQGRTG
DYIGLRLLDGVPEFIFDAGAEPVIVKGDRPLQLNVWHSIRVSRTDSKVTMDVDDTGPFIT
DSEEPWSAVLELNQPMYIGGVPDIDQLPAGLAGSDGFIGCVSTLILGHDEKNIMLDSLEQ
YGVDECRSCTPNLCVNDGICQEARNERGYMCICAPGFAGWNCERTGEACRAGLCGPGKCT
ETVDGYRCACPMSHTGKNCETKQLIAYPAFTGSAFLAINAPPPSRSMKMSLKIRAATPVT
DGIIMYCAESSRGYGGFTSLTVRNGRLEFRYDLGSGSTPVVLTSDRPLPANQWIDIQIAR
LADSVSMKINLVRSFERRLDRPAESLRFETPMFVGGVDDSTVVVNPNAGVSGGFSGCIKD
VVLNSNAVDINSSIKSSNIQECNTYDRGDIQASESCQCENGGSCSTESTNCICPPGYTGS
YCETRIASYLMSPPPPVNPCSLHPCRNGGTCKPDRNSWMNHTCDCPLGYAGASCQMPLEL
GQSVGFNGNGYVELPASLLRYDELASNPAVIALAVHTTNDGVLAYQREGQAPPNEGDYFL
LRIERGFVVLEWDLGGGLSSIVVDVPINDGERHQVAARLHEDGHAWLSVDGVDKSAPATG
ISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRDTAVAGRNTQLCR
DS
*(520 a.a.)

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