SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp27308_c0_seq4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_protein_pangolin,_isoforms_A/H/I/S_isoform_X1_[Amyelois_transitella]
Ontology
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005875 C microtubule associated complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007367 P segment polarity determination
GO:0007435 P salivary gland morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007500 P mesodermal cell fate determination
GO:0007507 P heart development
GO:0008013 F beta-catenin binding
GO:0009880 P embryonic pattern specification
GO:0010628 P positive regulation of gene expression
GO:0016055 P Wnt signaling pathway
GO:0019900 F kinase binding
GO:0030111 P regulation of Wnt signaling pathway
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045610 P regulation of hemocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060070 P canonical Wnt signaling pathway
GO:0070491 F DNA-binding transcription factor binding
GO:0072091 P regulation of stem cell proliferation
Transcript
Level		FPKM:0.64 TPM:0.54
ORF EntryO_TrvaMG18103_complete:A_TrvaMG_comp27308_c0_seq4
Sequence
(Nucleotide)
GCGACTGTCGGCCGGCCGCGGCCCGTACGCGCTTCTCCGTCTAACAGACGCCGATAATCA
AAATAATGACCAGTGTACCACATTACGTGCATCGGCAGTGCAATAAGCGACGACAGTGTG
TGATAACAAGAATGTAACGTGTTGTGTCAAACGGATAGTGAATATTGGAGTTTAGGCGCG
TGGAGTGCGCCATGCTTACAGTGTTTAGATACCAAGAAAAACTAACGGAAAACCTCATTA
GGGATTTAAGTCCAGTGATCTCATGTTAGTGACAAACTTAAGAATGCCGACTGTGTTGTG
ACGTGACATGGATGACAGATAGTCGTTTTGTCAGAGGATGATAGTGGAACTCGGCTGAGG
AAGATGCCGCATGCTCACTCGAGTTCGGCAGCGAGCTCGGGCGGGGACGACCTGGGCTCA
ACTGATGAAATCAAGGTCTTCAAGGACGAAGGAGACGGGGAGGACGAGAAGAGGAGCTCC
GAGAACCTCTTGGAGGAGAAGTCTAGTCTTATTGATTGGACTGAGAGTGAGGAGAAATCC
GGTGAGCCTTACCCCGGCAAACTATCGGTGAAGTCGGATCTTAGTCCTGTTTTTGGTAAA
TTTGAACCACATCCAGCAGCAGGATTCAACATGGGCTACCTGGTGACTCCTTACCCTTAT
CCCAACGGTGCTGCCCATCCTCTGCCTGTTGCTATGACGGGCAAGATGGGTTTGCCTGCG
GGTGGTAGCCTATCTCTGTTCTGTCCCGGGGGTGACTTGGGACAGCCGCCCCCCGCGCAT
ATGGGCATCCCCCCACCCTACCAGCTAGATTCGAAACTAGCGGCAGGGCTTGCGCGAACC
CCCATGTACCCCTTCCCGGGGGGTACGTACCCCTACCCCATGCTCAGTCCAGAGATGTCG
CAGGTTGCGGCTTCCTGGCATACCCCGAGCATGTATCCTATATCGTCAGCGGCGAGCGGA
TTCAGAAGTCCGTATCCTACGTCGTTGCCTATCTCCAGTTCTAGTCTATCAAGTGAATTA
TATCGGTTTTCTCCAACGCTGGGCGGGGGCCTCGGGCTAGGTCTGGGGCCCGCGTTGGTA
CCCCCTCCTCCTTCGAAGGCGGATCTTGAATCACATCATTCTCGATATGCTAGGTCATTA
GAAAAAGGTAACAGCAGTACCCCGAACGACAAACCGGCGGAATCGTCGGCGAACTCGAAC
AAGGAACAAACCAAGAAACCACACATAAAGAAACCACTGAACGCTTTCATGTTGTACATG
AAGGAGATGAGAGCGAAGGTGGTAGCCGAATGTACGCTCAAAGAGTCGGCGGCCATTAAC
CAAATATTAGGACGACGGTGGCACTCGTTGAGTCGCGAGGAACAAGCAAAGTACTATGAG
AAAGCGCGACAGGAGAGACAGCTCCATATGCAGTTGTACCCGGGATGGAGCGCGCGTGAC
AACTACGGTTATGGTAGCAAAAAGAAAAAGCGGAAAAAGGACCGCAGTCCCGCTGAGCTG
GGAGGTATTGGACCTTAGGCCGTGACCCGACACGCGAGGGGCTGGGCTGCCATGTCACAT
GGACGCTTGTGTACACTCGCTTCTCCCCCACCGCCCCGTCCCCCTCCTACTAACACTGTG
CTTGCTCGAGTGTCGGCAGTTGGCCGGGCGCACGATTAACCGAGTCCACACTAACGTTCA
TGGAGCATCCGTAACCCGACCCGTCCCCGTATGTGAGTGTGCGTGTGTG
(1729 bp)

- SilkBase 1999-2023 -