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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp27248_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		Collagen_alpha-1(IV)_chain_[Papilio_xuthus]
Ontology
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005587 C collagen type IV trimer
GO:0005604 C basement membrane
GO:0007391 P dorsal closure
GO:0035848 P oviduct morphogenesis
GO:0055013 P cardiac muscle cell development
Transcript
Level		FPKM:7.62 TPM:6.42
ORF EntryO_TrvaMG17554_5prime_partial:A_TrvaMG_comp27248_c0_seq1
Sequence
(Nucleotide)
CGCGCACGGGATTCTGGCGCAGCGCGCTTAGTGCCATGGCTCTCTACGTGCTATGGTTAG
TAGCTGCATTGGCTCCTCAACTAATCGGAGTAAACTCGCAAAACAATAGGTATGGAGAAT
GGAATAATGCATATTCAAGAAATTATCCACCAAGTAACTGGCCACCAGAAGAAGTGCCAG
ATACTGAACGTCCTTATGCTACGAATCAGTATGGGTTGTACAACAGAAATGATATCCCGT
CTCCTCCATCAGGATCTAATTCAGAAATAGGGAATAATTTCGCAGTATACGACCCCGATA
CAAGACAAAGAACATCAACAATCGTCAATCGTAACTGTACAGCTCCTGGCTGTTGTGTAC
CAAAATGTTTCGCTGAAAAGGGTAATCGAGGATTCCCAGGACAAGCGGGACCACAAGGTC
CACATGGTCTCCCTGGACATGAAGGTGCTGAAGGTGCTCAAGGCCCTAAGGGACAAAAAG
GTCAAATAGGTCCACAGGGTCTGCGTGGTCCTAAAGGTGACAAAGGTAGAACAGGTGAAA
AAGGATTTACCGGTAGAATGGGTATTCAGGGACCACCTGGAGATCAAGGTAGACCAGGAA
TTCCAGGAAGAGATGGTTGCAATGGAACCGACGGTGTTCCTGGAGTGCCAGGATCAAAAG
GATCGCAAGGACCTCGTGGTTATGCTGGCTCTAAAGGAGACAAAGGAGATAAAGGAGAAG
CAGCTCATGTTGGACGATATCCAAAAGGAGAAAAAGGTGAACCTGGTACAGACGGCATGC
GGGGTTCTCCGGGTCTCGTTGGGCCCCAAGGTCCCCCAGGCTTAGAAGGGCCAAAAGGCA
GAACAGGCCCCATTGGTTTACCAGGTCCCAAAGGTGACAAAGGAACTAAAGGTTTACAAG
GACATTCTATCCAAGGTGATAAAGGAGAAAGAGGTGACAAGGGAGATAGAGGTCAAAGTT
GTTCTCCTACTTCTACTGTAGATTTTGATCATAATAAAGGAATCCATAAACAAATCCAAG
GAGACATGGGGGAAAAGGGTGACAAAGGAGAACCAGGTCGTATAGGACAAAAAGGAGATA
CTGGACCTATGGGTGAACCTGGGCTTCCAGGACAGATGGGCATAAAAGGGGAAAAAGGTT
TACGAGGAAATCCGGGTGAAAGAGGAAGAGATGGAATGTATGGTGCTCCTGGCCCAATGG
GTAGTAAAGGAGAAAGAGGAAATGATGGATTACCTGGTTTATCTGGGATACCTGGTGGAA
AAGGTGAACCAGGTAGAGATGGAATGCCAGGAGTTAGAGGCTTAAAGGGTGTTCCAGGAC
CACCAGGTGGCCTTTCTGGATCTCAAGGACCTCCTGGGCCTCTTGGTCCCCGAGGATATG
ATGGCCCACAAGGCCCAAAAGGCACTGATGGAAGACCTGGAGAAAGAGGCCCAACAGGAC
CTATGGGATCTCCAGGAAGTCAAGGTGAACCGGGTACACCAGGAATTGAAGGACCAGCGG
GTCATAAAGGAGAAAAAGGAGAAGCCGGTTTTGATGGTCAAAAAGGAGAACCAGGGCCTC
GTGGTTACGATGGCAACGCTGGACCGGTTGGGCCTCGAGGAGAGAGAGGACAAGATGGAA
TATCTATACCCGGTCGAAAAGGAAATAGTGGTTTGCCAGGTTTATCCGGAGAAAAAGGTC
AAAAGGGTGAGAGAGGTTACACTGGCCTCAGAGGAGTTCCTGGAAATTCTACCCTTGGTA
CACCTGGTACTCCTGGTGAAATAGGTCTTCCTGGAGAAAAAGGAGATAAAGGAATGCCAG
GTTATGATGGAATGCCCGGAAGTACTGGACCTAAAGGTGATACAGGAGGTCGGTGTAATG
AGTGTTCGCCTGGGACTCCTGGTGTAAAGGGTGATCGTGGTGGCGATGGAGCAACTGGTC
CACCAGGAGAAAGGGGACCCGTAGGTCCAATTGGTCTCACTGGCGAACGAGGTGCTGATG
GTATGCATGGATTACCAGGTTCACCTGGAGCTCCGGGTGATCGAGGAGAAGATGGTCCAG
CAGGAGCACCGGGTGACAAGGGAGCAGATGCCAATATACCACTAAGCTTAGTTAAGGGTC
CAAAAGGAGACAAGGGGGCTAGGGGTCCGGAAGGACCCAAGGGTCCTAAAGGTGAAGTTG
GTCGCGATGGTTCTAAAGGAGAACCAGGACAAATTGGAATGCCAGGTCCAAAGGGAAACA
GAGGTGACAAGGGTCAACCTGGTATTGATGGAATACCCGGAGTTGATGGTATTCCAGGTT
TACCTGGGTTAAAAGGAATATCTATAAAAGGAGAAAAAGGTTTGCCAGGAGATAGAGGAT
TTAAAGGCTCCAAGGGTAATCCAGGTGATAGAGGTTTTAAAGGTCAAGCTGGTCAATGCC
CTGTTGATGTGAAAGATCTCACTCGAGGTGATAGGGGAGCTCCCGGAGATAACGGTCCTC
CAGGACCACAAGGTGAATCCGGAGAGAAAGGAGATATGGGTTTTATTGGACGACAAGGTC
AAAAAGGTGAAGTTGGTCCTCCTGGTAAGCAAGGCCCTGTAGGTCCACGAGGTTTCCCAG
GACCAAGAGGTGATAAAGGAGAAGAAGGTGGTAAAGGATTTGCGGGAACTCCTGGTATGG
ATGGACCACGAGGTTACCCGGGAAATCCCGGTTTCAAAGGAAATAAAGGAGAAACTGGTC
CTTCAGTCGCTGGTGCACCGGGAATTCCTGGCTCACCAGGTCAAAAAGGTGACGCTGGAC
CTCGTGGGTTACCTGGTATACCAGGAGACGATGGTCCACCAGGCCCCATAGGTTTACCTG
GAGAAAAGGGAGATCAAGGTTTAACTGGTAAACCTGGTTACCCCGGACCACCCGGACAAA
CTGGTGAACCAGGACCTACTGGACCTCCAGGTGTTCCAGGTACTCCTGGATTACCTGGAA
GAGTGGGATTAAAAGGACACCAAGGTTTACCTGGGGCACCTGGACGGCCTGGCAATATTG
GATTACCTGGTCAAAAAGGAGATCAAGGAATACAAGGTCCAGATGGACTAAAAGGGTTCC
CAGGTACACGAGGATATCCAGGTATTCGCGGTGTTTCAGGAGCACCTGGGTCACAAGGTG
AAAAAGGTGATAAAGGAGATATTGGTTACCAGGGACAACCCGGTGCGCCAGGACCGAGTG
GACGACCAGGACCGGTAGGACCAATAGGACCCAAAGGAGATAAAGGATTTGACGGAGCTC
CAGGTATACCAGGTTTACCTGGTTTAGATGGACCAGTTGGCGATAAAGGTTATACGGGAC
CAAAGGGTGATAAAGGAGAAGCCGGGCTAGCCGCTGAAAAGGGTTCCAAAGGAGAACCTG
GCCGACCTGGTGCCTTTGGAATGGATGGAAGGCCTGGTAGAGATGGAGATAAGGGTGACA
CAGGCGAACAAGGAATTCCAGGTCAAGGAATACCTGGTTTATCTGGACTTAAGGGTGATA
TGGGAATTCGTGGCTTAGATGGATTACCTGGACAAAATGGAGACAAAGGAAACCGTGGTC
CTCCAGGACCTATAGGTAACAAAGGTGAATCTGGTATCCCAGGTAGACCTGGGCAGCCCG
GACCGCCAGGTCTTGATGGAACTCCTGGTGAACCTGGAGAAATCGGTTTACCTGGACTAG
ATGGCGAAAAAGGTGATAAAGGTGAGCTAGGTTTTCCTGGACGAGATGGTCTGAACGGAC
AGAAGGGTGATCGTGGTTTACCAGGGTTAGAAGGCCCCATAGGACCTATCGGGCTACAAG
GTGTTAAGGGAGATACAGGATTGCCTGGTTTATCTATAGACATTAAAGGTGAAAAAGGAG
AAATTGGCCCTAGTGGTATACCTGGAGAACCAGGTCAAAAAGGAAATCAAGGACCGCCAG
GTCTACAAGGTCTGCAAGGCCTTAAGGGTGATCGTGGAAAGGAAGGAGAAAAAGGAGAAC
GAGGTTTCGAAGGTCGTGTTGGACAAAAAGGAGACACTGGTCCCATTGGCCCTGTTGGCA
TACCAGGTTTGACCATAAAAGGAGAAAAAGGTTTACCAGGAACTAATGGAAAACGAGGTC
ATGTTGGAAACCCTGGTGAATCTGGGCAAAAGGGTGAACCTGGTCCACCTGGAATAGCAG
GACAAGTAGGTCTACCAGGAATTCCAGGGCGCGAAGGAGAGAAAGGACAAAAAGGTGAAC
AGGGTAATGAAGGCGTGGCTGGGCCTCCTGGTCGTGAAGGACCGACTGGCCTACCAGGAC
TTCCTGGTATTACTGGCCAAAAAGGAGATCGAGGAGAAAAAGGTGCGACTGGATTTGGAG
CGCCAGGACAAAAAGGTGACCAAGGGCCATCAGGTATCCCAGGTTTTTCTGGTGAGAAAG
GTGATAAGGGAGATCGTGGACAAGATGGTATACCCGGTCGACCAGGGCCTGTAGGCCCTA
TGGGTATAAAGGGTGACCGCGGTTATCAAGGAAGGCCAGGTTTGCAAGGTGAGCAAGGTA
TGAAAGGTAATAAAGGTCAAGCAGCGGAATTAGTATATGGAGCAAAAGGTGAACAAGGTC
CACGTGGTTTACCAGGAAAAGATGGTCTACCAGGTGCACCGGGTATACCTGGACGTCCTG
GTAGTGACGGACCCCAAGGCGAGAAAGGCGAAAGGGGTTACCCTGGAGCAACGGGTATCC
CAGGGCCAGTCGGTCCTCCTGGTATTGCAGGGTTGCAAGGTGAAAGAGGTGATATAGGGA
TGCAAGGCAACACTGGTTACCCTGGAGAACCTGGAGCACCATGTGTCAGTCAAGACTTTT
TAACTGGAATTTTATTAGTACGGCACAGTCAAAGAGAAGTTGTACCCCAGTGTGAACCCG
GACATGTCAAATTATGGGATGGTTATTCTTTGTTGTATATTGACGGAAACGAAAAAGCTC
ATAATCAAGATTTGGGATATGCTGGTTCATGTGTAAGAAAGTTCAGTACAATGCCTTTCC
TGTTTTGTGATCTAAATGACGTCTGTAATTACGCAAGTCGTAACGATCGCAGTTATTGGT
TGTCTACTGGTCAGCCAATACCTATGATGCCCGTAGAAGGTCAAAATATTGCAAAATATA
TTTCGAGATGTGTAGTATGTGAAGTCCCGGCCAACGTCATCGCAGTCCACAGTCAAACTT
TAGATATACCCAGTTGCCCAGTCGGCTGGAATATATTATGGATTGGTTACAGTTTCGTCA
TGCACACTGGCGCAGGAGGACAAGGCGGTGGACAAGCTTTAGCTAGTCCTGGTTCATGCT
TAGAAGATTTCCGGTCAATACCGTTCATAGAATGTAACGGAGAAGGTGGAACATGTCATC
ACTTTGCTAACAAACTAAGTTTCTGGTTAACTACAGTCGAAGATAGTCAACAATTCAACG
TACCTCAACGTGATACTCTTAAATCTGGACGACTCCTTGAGCGTGTATCGCGATGTGCTG
TTTGCATTAAGAACACACATAGTTAACTAGGTTACAATCATTTCTGACTACCATATTTTA
ATTTAGCTTAGGTTAGCAGGATACAGTTCTCTCGTAATATGTGCACATCAAAAAGGTAGT
CGATTACATAGTCATGAGAGATAATAATTTCAAAATTATTATTAACCTACTAATGACACC
AAAGCATTTAAATTAAGTTTAGACTAATCATAAATAAATTTTGTTGCATAAAACGTTTAT
AAAATATTAATATATTTAATAATTTCCAAATAAAATTCTCCTACCCTAGTCATTCTTAAA
AATCAGATAAACTAGAATCCGAATCCCTGCTATGATTGCTATGAGTGATGAGCATTCGAA
AAATCAATAAAATTGTATATATTACTAAATATTGATTTAAAATTATGTTGTTTTTTGATT
GTTTCGAACCATAATTATTATGAATGAAAGCAATTAGATATAAGTTTTTGTTTACACTAT
TTAACTAGATTTATTAAGAATTTGTAACCCTATGTCTCCAGCTAACTTCCGTAATAAAAA
TTAAGAAAGATACACTTACTACCAATAAATAATATTCCTTTAGTAATTTAAGCACTGCCA
TTGTAGATAGTGTCATTTTAAGATCGATTATAATTAATAAAGAAATAAAATTAAAAAAAA
AAAAAAAAA
(6129 bp)

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