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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp27209_c0_seq2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_DNA_damage-binding_protein_1_[Papilio_xuthus]
Ontology
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0000717 P nucleotide-excision repair, DNA duplex unwinding
GO:0000784 C chromosome, telomeric region
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006293 P nucleotide-excision repair, preincision complex stabilization
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006974 P cellular response to DNA damage stimulus
GO:0016032 P viral process
GO:0016055 P Wnt signaling pathway
GO:0016567 P protein ubiquitination
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035518 P histone H2A monoubiquitination
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045070 P positive regulation of viral genome replication
GO:0046726 P positive regulation by virus of viral protein levels in host cell
GO:0051702 P biological process involved in interaction with symbiont
GO:0070062 C extracellular exosome
GO:0070911 P global genome nucleotide-excision repair
GO:0070914 P UV-damage excision repair
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1901990 P regulation of mitotic cell cycle phase transition
GO:1902188 P obsolete positive regulation of viral release from host cell
Transcript
Level		FPKM:7.32 TPM:6.17
ORF EntryO_TrvaMG17286_3prime_partial:A_TrvaMG_comp27209_c0_seq2
Sequence
(Nucleotide)
GGCGAAATTGTTGGAAGTTTTTTTGAACTCGCGCAGGCCAATGCGCGGAAAAGTCGATAA
ATTCGGCTGATAATTGTACTCTTTCGGGAATAAATGGCCACAAAATAAAGTGTTTATATT
GTGTGACAAAGTTAAAAAGTAATAAAAACCAAAATGTCGTACCACTACGTGGTTACAGCT
CAAAAACCGACTTCGGTCACAGCATGCGTAACAGGAAATTTCACATCCCCTACGGACCTG
AACCTCTTGATAGCGAAGGTGAACCGTCTGGAGATGTATCTGGTCACACCGGAAGGACTC
CGTCCGATGAAAGAAGTAGGGTTATACGGGAAGGTGGCTAAAATGAAACTATTTAGACCA
GCAAACGAAAACAAAGATCTAGTATTCATACTAACAGCAAGATACAACGCTATGATACTA
GAATGGCGCACTGGTGATAACGGAGAATTGGAAGTGGTAACTCGTGCACACGGCAATGTG
TCTGATCGTATCGGTAAACCTTCTGAGAACGGCATCCTGGTTGTGATTGATCCTCAAGCA
AGGGTTATCGGGCTGAGGCTCTATGATGGTCTGCTCAAGATAATACCGTTGGAAAAGGAT
TCTGCGGAACTCAAGGCAGCAAGTTTAAGGTTAGAAGAATTAAATGTGTACGATGTTGAA
TTCCTTCATGGTTGTGCAAATCCAACATTGATACTCATACATCAAGACACAAATGGAAGA
CACATCAAGACACACGAAATAGGTTTACGAGATAAAGAATTTATAAAAGCTTCATGGAAA
CAGGATAATGTTGAAACTGAAGCATCTATACTCATTCCAGTACCGAGTCCATTAGGTGGG
GCAATAGTAATTGGACAGGAATCAATAGTATACCACGATGGTCAGAGTTATGTAGCGGTC
GCTCCGCCACAAATAAAGATGACTCCCATAAACTGCTATTGTCGCGTGGACAGTCGCGGG
TTGCGTTACCTAGCGGGCGACATCGCAGGCAGACTGTTCATGTTGTTGTTGGAACTGCAT
GAGAAGATGGACGGTACTCAGGCGGTTAAGGACCTTAAAGTCGAGCTTTTGGGTGACATC
CCGATCCCGGAGTGCATGACGTACCTGGACAACGGCGTGGTGTTCATCGGGTCGCGGCTC
GGGGACTCCGCCCTCGTGCGCCTCTCCACCACGCGCGACGACACCCACCAGTACGTGCTG
CCCATGGAGACCTTCACCAGCCTCGCGCCCATCGTCGACATGTGCCTCGTCGACCTCGAG
CGGCAGGGACAGAGCCAGCTCATCACGTGCTCCGGTGCGTTCAAGATGGGTTCCCTCCGC
ATCATCCGTAATGGCATCGGCATCCAGGAGCAGGCCTCCATCGACCTGCCGGGCATCAAG
GGCATGTGGCCGCTCACTCTCACGCCAGACTCGCAGTACCACGACACGCTCGTCTTGTCT
TTCGTGGGACAAACTAGAGTGTTAACATTGAATGGTGAAGAAGTTGAAGAAACAGAAATT
AAAGGATTCCTCTCGGATAGACAAACGTTCTACACTGGAAATGTTTGTCACGATCAGCTT
ATTCAAGTAACAGACGAAGGTGTCCGCCTGGCCGGGCGCGTGGGTAACGGATGGGAGGTG
ACGTCACAGTGGCGCGCGCCCGCCGCACTCTCCGTGGTCACGTGCTCCTACACGCGCCTC
GTGTGCGCAGCCGGACCGCGCCTCTACCTACTCAACCTGCACCACGGGGACATCGAGATG
AAGGCCGAGGTGTGCATGGAGGAGGAGGTGGCGTGCCTGGACATGGGGCCGGGTGAGCAC
GAGGCGTTGTTGGGCGTGGGGCTGTGGACGGATATCTCCGTTCGTGTGTTGCGTCTGCCT
GACATGAAGCCACTGCACACTGAGAAGCTACAGGGAGAAATAATACCGCGTTCGCTTCTA
ATCTGCGTTTTGGAGGGGATCTGTTATCTCCTCTGCGCTCTGGGAGACGGCTCCATGTTC
TACTTCACTGTGGACGAGAAGACCGGGGTACTGTCTAAGAAGAAGAAGGTGACGCTAGGT
ACACAGCCCACCGTGCTTAGGAGTTTTAGGTCTCTATCCACAACTAATATATTCGCGTGT
TCGGATCGTCCCACCGTTATATTCTCGTCGAACTGCAAGCTCGTGTTCTCAAACGTGAAT
CTGAAGGAGGTCACTAATATGTGCTCGTTGAATGCACAGGCTTATCCGGATAGTCTAGCG
TTGGCGACAGATAGCACGGTGACCATCGGCACTATAGACGAGATACAGAAGCTGCACATC
AGGACGGTGCCGCTCGCCGAGACGCCGCGCCGCATCGCCTACCAGGACGCCACGCAGACA
TTCGCCGTGATCACGATGCGAGTCGAGAAGCTGGAGTGGGGCGACGCGGGACGCGCGCTC
GACCACGAGCTGCACAACCTGCTCGTACTCGACCATCACACGTTTGAAGTGCTCCACTCC
CACCAGCTGATGTCCAACGAGGTGGCCATCTCGCTGATGTCGTGCCGGCTGGGCGACGAC
CACAACCACTACTACGCCGTGGGCACCGCCACGCTCAACCCGGAGGAGGCTGAACCTAAG
AAGGGCAGAATAATACTATTCCATTGGACGGAAGGAAAATTAGTTCAAGTAGCCGAAAAG
GAAATAAAAGGCGCGTGTTATTCGCTCGTAGAATTTAACGGTAAATTATTGGCGGCCATC
AATAGTACGGTACGATTATTCGAATGGACTTCAGATAAGGAGTTACGGTTAGAATGCAGT
CACTTCAACAACATCGTAGCGTTATATCTGAAGGCGAAGGGAGACTTCATACTCGTCGGC
GATCTCATGCGATCCATGTCGCTGTTACAATACAAACAGATGGAGGGTAGTTTCGAGGAG
ATAGCCCGCGACTACAGCCCCAACTGGATGACGGCCATCGAGATCCTGGACGACGACACC
TTCCTCGGGGCAGAGAACAGCTTCAACCTCTTCGTGTGCCAGAAGGACAGCGCCGCTACA
ACAGACGAGGAGCGACAACAGCTCGGGTACGCGGGTCAGTTCCACCTCGGCGACATGGTC
AACGTCATGCGGGCCGGCTCCCTCGTCGCGCCGCACCACCACGCCGACTCCGCCGCGCCC
ACGCACCGCCCCGTGCTGCTGGCTACTGTACATGGCGCCATATTCCTAGTAGCTCAGATA
TCGCAAGAGCT
(3191 bp)

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