SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp27181_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_protein_transport_protein_Sec24C_isoform_X2_[Bombyx_mori]
Ontology
GO:0000139 C Golgi membrane
GO:0002474 P antigen processing and presentation of peptide antigen via MHC class I
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008270 F zinc ion binding
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030127 C COPII vesicle coat
GO:0048208 P COPII vesicle coating
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:47.58 TPM:40.05
ORF EntryO_TrvaMG17042_complete:A_TrvaMG_comp27181_c0_seq1
Sequence
(Nucleotide)
ATTTGAAATAAATGATTTGACTTTACTTTTTCCAGGAATTACCGAAAGACGATCAAGGGA
AGAGTTACACTCGCGTTGGATTCATAACATACAGTTCTACAGTTCATTTCTACAATATCA
AGGGCACCCTAGGCCAAGCCCAGATGCTGTCGGTGGGCGACGTGTGCGACATGTTCGTGC
CCATCCTGGAAGGGTTCCTGGAGCGAGCCGAGGACAGCGGCTCGGTGCTGTCGTCCCTGC
TGCAGCAGATCCCCGTCATGTTCAAGGATAATAAGGAGACGGAGACGGTCATGTTGCCTG
CTGTTCAGGCCGGTCTGGAAGCCCTAAAAGCAGCGGAGACGTCGGGTCAGCTGTTCGTGT
TCCACACGTCGCTGCCCACATACAATGCGCCCGGCAAGCTCGCCAACAGGGAGGACAGGA
AGCTGCTCGGCACCGACAAGGAGAAACAGATATTAGCCCCTCAGAACACGTCGTACAACG
AGCTCGGCCAGGCGTGCTCGGCCGCCGGCGTGGCGGTGCACGTGTTCGCGGCCAACAACG
CATACATCGACACCGCCACCATCGGACAGCTGCCCCGGCTCACCGGGGGACAACTCTACA
AATACACTTACTTTACTGCGGAGAGCGACGGCTCCCGTTTGATGTGGGACGTGCGTCGCG
CCGCGCTACGTCCCGCCGCGCACGACGCCGTCATGCGGGTGCGCACCTCCACCGGCGTGC
GCCCCACCGACTTCTACGGACATCTCTACATGTCCAACACTACTGACGTCGAGCTCGCTG
TTATAGACGCCGACAAAGCGATAGGAATAGAAATAAAACACGACGACAAGCTAACGGGCG
AAGACGGCGTCTACATACAAGCCGCGCTACTGTACACGCACCGCTCCGGACAGAGGAGGC
TGCGCATCCTGAACCTGGCGCTGAATGTAGCCCACCAGCTCGCCGACGTGTACCGGAGCA
TGGAGCTGGACACCTGCATCAACTTCCTTACTAAACAGGCCGTGTGGTCCATCCGCGAGA
CGGGCGGGCGAGCGGCGCGACAGGCGCTCAGTGCGCGGTGTGCGCGCTCCCTCGCCGCCT
ACAGGAGACACTGCGCCTCGCCCTCCGCCGCCGGACAGCTGGTGCTGCCCGAGTCCATGA
AGCTGCTGCCGCTCTACACCAGCTGTCTGCTGCGCTCCGACGCGCTGGCCGGCGGTCCCG
ACATCACGTGCGACGACCGCTCGTGCGCGATGTACCGCGCGCTGACGGCCGACGTGAGCA
CGTCCGTGGTGTACACCTACCCTCGCCTGCTCCCGCTGCACAAGCTGGCGGACTCGCCCG
ACGCGCGCCTCACTCCGCTGCGGGCCTCCATAGACAAGATGAACGAGTTCGGAGTTTATT
TGTTAGAGAACGGCGTCCACATGCTCCTATGGGTGGGCTCCCAAGCCTCCCCTGACTTCC
TGCGCGACGTGTTCGGTGTGACGTCACCGCAGCAGATCGAGCCCGCGGTGTGCGAGCTGC
CCTCCCTCGACACGCCGCTCAGCCGCCACGTCAGGACGCTGCTGCAGCGGGCCAGGAGGG
ACAGGAGGGTGTGTATGAGGCTAACAATAATGCGACAACACGACAAATTAGAAACCGTAT
TACGTCACTTCCTGGTCGAGGACCGCGGCGTGGACGGAAGTGCGTCATACGTCGACTTCC
TGTGCCACGTCCACAAGGAGATCCGACAATTACTATAGCATGAAAAAGAAATCTCTAGGA
CATACGTTCCTAGGAGGAGATATTAAAACTTCGATGGGAAAAGACATAATATTTGCATTT
TTTTAAAGTAATAGCACTGGTATGCTTATTCAGAGGTCAATTTGAAGAGAAGTATATTTT
ATTATCTGTGAAACTATGCTTAAGATTAACTTTTAGATGCGGGTATCTACAAAGTAAGCC
GTTGTGAGTCGACTTCTGTGCTATATACGCCATTGATAAATAAGTCACAGGAACAATAAA
ATTATGATTTTAATGTACTTTTCCCTTGTACTGAACAACTTGTATAAAAATGTCAGAAAA
ACGACTTAAAATTACAATAAGCACCTATTTATATTGGATCTTACGATGTGCCTATTTCCC
TCTAGTTTCATAAGAATGGCGCATTTCATTTGAAAACAAATTCGCGCCAAAAATGTTTTA
TTCCGTGTACCGATTCGCATGTAACCTTAGCTTTAGTTCTGATGTTTGAATACTAAACAA
ATCATTCGAATTGTTAAATCGATTCTGACAGTATCGATTTTAAATGAAGTTCGATTTTTT
AGTATTCTAACATAGCGTTTGGGGTTTGCCTAAGGAGTATCAAGTTATTAGTGAATACAA
TTTTTTTTTCCATATCTTATTATGTATACAGGGTGATACTAGAATTGTGGTACAAATTGA
AGGAGGGTGATAAATACTCGATTTTGATATAAAATATACAGGGTGTCTCATGACTGACAT
GTTCAATTAAATTTTCACGTTATTTTGAAACCATGTATGTTTGGAGGGATTTTTTTGCCT
CGTAGGAAGACGAGCTACCAGATCGTAAGCGGTCACCTTTGCTCATGGACCTCTATTACA
TTGTCAGGAGACACTGCGAGGCCGCTACCTTCGGCTTATTTTTCTAAATTGTTCTTTCTA
TTGACGTTATAAAGTACAAGGTGTAGTTTTTCCCGATTTTGTTAGTTACATTTTCCGACG
AACCAAACAATTTATGAAGAAACTTTGAACACAGTTATTAAAAATGATGCCCTTTCATGT
CGCATAGTCCTGGGACACCCTGTATATCAACTAACATGACCTTGAATATGTACCATATAA
TTTTACACCCTGTATTCTGCGGTGTGTGGCCCCTTTAAAAGTGGCACAACACTGAAAACC
TTGTTAACTACAGTATTTTAGAACTAACAAAAATGGTTTATCTTGCTATACTGACAAAGT
AAAATAAGACCATTTTTGTTTGGTATAAAATTAAATATTACTATGGCGGACCCGTAATTA
GTTAGTTCTGTTATTATTATGTAATGTTCTTAGTTATTAATTGTTATAAAGGAGTCTGGA
ATTGTAAATAAAATATATTTGAATTATTTTTTAAAAAAAAAAAAAAAAA
(3109 bp)

- SilkBase 1999-2023 -