SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp27168_c0_seq3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_nuclear_receptor_corepressor_1_[Bombyx_mori]
Ontology
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0002155 P regulation of thyroid hormone mediated signaling pathway
GO:0002361 P CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005876 C spindle microtubule
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007623 P circadian rhythm
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016568 P chromatin organization
GO:0016580 C Sin3 complex
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0019904 F protein domain specific binding
GO:0021794 P thalamus development
GO:0031065 P positive regulation of histone deacetylation
GO:0032922 P circadian regulation of gene expression
GO:0035033 F histone deacetylase regulator activity
GO:0035257 F nuclear receptor binding
GO:0040014 P regulation of multicellular organism growth
GO:0042632 P cholesterol homeostasis
GO:0042826 F histone deacetylase binding
GO:0042974 F retinoic acid receptor binding
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046329 P negative regulation of JNK cascade
GO:0046965 F retinoid X receptor binding
GO:0046966 F thyroid hormone receptor binding
GO:0051225 P spindle assembly
GO:0060318 P definitive erythrocyte differentiation
GO:0072362 P obsolete regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter
GO:0072368 P obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
GO:1904017 P cellular response to Thyroglobulin triiodothyronine
Transcript
Level		FPKM:2.46 TPM:2.07
ORF EntryO_TrvaMG16901_3prime_partial:A_TrvaMG_comp27168_c0_seq3
Sequence
(Nucleotide)
CGCGAACCGAACGCGCGTCCGGCGGGCGACGTTGCCAGCTCTTCACGAAAAAAAACCAGA
TTCGACCTTCTTAGGACCCCCGGTTTTTTTTTTGTTTAGCCGCGTTATCATTCGGGAAGC
AGTGTATCGAGGTCCTTATCCGTTTCTGAGATGGTGTACACATCGCAGGTGAAACTGTGT
GTAGTGATTGTGTCTTAGTGTATTATGGTGTGGTCTACTCATTCGGGAGAAGTGTTGATC
GACATCGTTACAAGGCCCGGGCAGTCTGATCACGGGCACAGCGGCGGCGCGCTGTCGTAC
GGCGGCAAACCGGCGGGGGCAGTGGTGGCGCCGCCTCGTCCGCCGCCCACTACGCCCTAC
GCGCCGCAGCCTTACCCACCAGCTCAGCTGCGATTGCACCAGCCTGGCTATGGCTCAGCG
GCACTCTCATACAGGGATGGAAGCTACGGCCGCAGCGGTGGTGCGGTGGGCGAGTACCGA
GGCGGGGGTCGCATGTCGTTGCTGGGCACCACGTACCTGCCTCCCCCCGCGCCGGCGACC
CTGCACCCTCCCCCCGCAGACCCGCCACCCTTCAAGAAGATCCGCCTTACTGCTGAACGA
GCGCCCATCACGCAGTTGACTCACCATCTGCCCCTCAGGGTCGACACTAGGGAGCCGGTG
AACTCGTACAACACGGTCGATGTACTACTGTCACCGAACCCGACCTCGGAACCTTCCGGC
GAGGACCAGACGCTCCGGACCACCAAAGATGTCCTTCTTAAGGAAATATCTAAGGTGGAC
CGAGAGATGGCGCTGGTCGAGAACTCCCTCGCCAAGTTGAAACGTAAGCAAGAGGAGCTA
CAACAGTCTGCGTCCAAACCGGCGCAGACCGAAGAGCCTGAGGAGGCACCTTCACGGCAT
AGGAGTCTCGCGCAATGTATATACGCTGAAAATAGAAAAAAGGCGGCCTCAGCCCACGGT
CAGCTGGACCACCTGGGCCCGCCCGTGCCCTACCCGCTCTACAACCAGCCTCAGGACACG
GAGGTCTACCACGAGAACATTAGGAAACACAGATTATTTAGGAAAAGATTGATCGTACAT
ATACGGAGAATAAAGGCTGAGTCTGAAAAGAGAGAAGATTTATTAGCAGACGAGTACACG
AAACGAGCGGCGGAGTGGGCGAGAAGAGTTGAAAGAATAGAACAGAGTCAAAAGAGAAAA
GCGAAAGATGCCAAGAACAGGGAATTCTTTGAGAAGGTATTCCCGGAGCTTAGAAAACAG
CGCGAAGAACGAGAAAGGTTCCACCGTCTCGGGGCGCGCGTCAAGTCCGAAGCTGAACTT
GAAGAGTTGGCTGACGGCCTTCATGAACAAGAACACGAAGACAAGAAGATGCGGGCGTTG
ACCGTGGTGCCGCCATTGAGGAGAGACCCGCTGGATACCACGCCTATATACCTAGATACT
AACACGTTGATTCCAGGAAGGTGTCTCGACATGAAGTCGGAGCACAAGGAGCTACAACTC
CGGAACATCTGGTCGCAGGCCGAGAGGGAGATCTTTAGAGAGAAATATCTGCAGCATCCC
AAGAACTTCGGGACGATAGCGTCGTTCTTACCTAGGAAAAACGTTAGAGACTGTGTTAGA
TTCTACTACCTATCGAAGAAGTGCGAGAACTACAAGCAGCTCCTCCGCAAGCCCCGACAG
CGCCGCTCGACGCGCAACCCGCAGCGCACCGCCGTCGAGACCGACCTGCCCGCCGGCGTC
ACCACGCGGCTGCAGCGCTCGCAGGGAGCCCGTTGTGCGGACGTCAAGGAGCCCGTACTG
GAGGAGACGGCGGGCGTGCTCATACCGGAGCCCTCCGCCGTGCCGCTGCCCGCCGGAGCC
GCGCCCCAGCAGACACACGGTTACGCGTCAATCAGGGTAGAACTAACACGAACACCTCCT
CTACCGCCGTCCCCTCCCCCGGCGTCTTCAGCCCCGCTGGCGGTGACCACCGCGTCGACG
ATACTGCTCACGATGGCCCCCATGGACAGTCCCTCGTCGATCCCTATACCGGCCTCGTCG
CCACCGCCGACCGCGACCGTTCTAGAGCTGCCGGCCACGACGACGGCGACTGTCACGGAA
ACTACCGTCACCATCACCGCTTTAACTTCCGCACAAGACTCGCCGCTGCCCGCCGTAGAG
TCGCCAGTGCCCACACCTGCGCCCTGTGTGACACCCACAGTAGTGGCATCACCGGCCCCC
GCGCCCTCGCCCACTCCCGCCGTCTCGATACCGTCGCCCGCCTCGACCCCCGCGTCGACC
AGCCCGTCCATTGCAGCGACGGTATCGACGTCGACGAGCACGCTGATCACCACATCGCCG
AGCGCGACCACGGTGCCGTCGCCTGCCTCCACTGTTGTAGTATCGGCGGTGGTGACGTGT
TCGCCGTCCTCGACCCCCACGTCGGTGGTGGTCCCGGCGGTGATCACGGTCGCGGGTCTG
CCCTCGGGTGGGGGTGCGAGCGGCCCGTCGAGCGCGCCCCCCACCCCGCAGCCGGCTAAC
CCTCCCACGCCTACGCAGCCTCCTCCAACACCAGAAGCAGCGGTAATAGAAAGGATAGGA
ACGCCATCGACTAGCGTAACACCTACCACTACCACGACAACCACAACAATGACTACCACG
TCTTCAAACTGCGCGGTCTGTAGTGCACCAGGCGCTACCAGAACCGTTTCCAGATCAAGA
GCTGCACATTACGGACTTAAGGAGGAGTCAGTGGGTTCCCGCGTGTGTGAGGCGTGTCAC
TGCCGCTGCGTGCGGTCCCGGTACACGCGGTGTCCGGTGCCCACGTGTCCGGGGCCGCGT
GTCCGCGCCAAACGACTGCGACACCTGCCGCCGCGGTGGCACGACCTCGCCATAGAACTG
AAGCGACCGCTCATGGATGAATTCCAAATCCCCAGCGAGCTGAGCAAGTGTTGTCTATCA
TGTCTGAAGCGTATAACTCGTCGGCTGGAGAGCGCGGGCCCGGGCTGCGAGCCCAGCGAG
GACGAGTTCCGCGGCTGGCTCCGGGACCACGGCACCGCCTGGGACAAGATCGCGGCGCTC
AGCGGCAGGACACCGGCCACGCTTAAGGCTTACTACTTTACGTATAGAAAAAAGCTGCAA
CTAGACTCGATAGTATCAGGCGGTAGTAGCACGACCAGCGCAACGGGTCGCTCGTCCAGC
GAGGAGAGCGGCTCCTCCGAGTCGGAGGGGGGAGTGGGGTCCCCGCCCCCCGCCGCGCTG
CCCCCCGCGCCCCGCACCGACGCCGCCGCCCCGCGACGAACCAGGAAGGACGAGTACGAC
TCCTCTGCTACTGAAACTGCGGACGAGGAGAACGACGCTCCTTCTGTTAAGGTGTTACCT
TCAACATCAATGCCGACGCCGGTGTGTTCGACGCCCTCATCGACAACGTCCACCGCCAGC
CCGCTGACGCCGACCATCCCCTGCTCCGCCGTGTCCAGCACGCCCCCCACTTCCATCGCC
ACCAGCGTGCTCACCTCCGTGCCGGGCGCCACGGTGCTGACCCCGGTGTCCGGCGCCACC
GTGCTGACCCCGGTGTCCGGCGCGAGTGTACTGACTCCAGTGACTGGCGCGAGTGTGCTG
ACGAGTGGCGCGAGTGTGTTGAGTGCGGCGAGCGGGCCCAGCGTGCTCAGTAATACGGCG
CAGGCGATCAGGTCGGCCGTCTCCACGCCGCAGACTGTTAGAGACGTTGTGTTGAATATT
ATAGAGTTTAGTTTGAGTAGAGAAGCGCAGCCTCCGCCCATCAAAACGCATCATCTTAAG
ACTCCTTCAACAACACCGAGCAGATCAAGCAACGACAGCTTAGCGACATTAACAGTAGTG
AACAGCAGCCACGCCGGCCACAGCCCGTCCCCTCGCTCGCCCCGACCCACCGCCACCATC
ACGCCGGTGGGGGCCGCCCCCGGGGGACAAGTAGGGAACCAAGGGGACAAGGATGGGGTC
GTCGTATTGATAGAACCTCGGCCTGATTCGTTGCTCGATCTCACCGTGAAAAGAACAGAC
AGGAGACCGGAACATGCATTCCCTACTCCCAATAAATCAAACACCTACAGAAACTCAGAA
TACGCTCAGTACGCTCGCGAGCGCGAATCTCCGAACCAATACAACACGAAGAAGGCCGTC
GCGAACTCCAGCGTGCGCGTCCTCAAGAACGTGACCAACCCCAAGGGCTCCATCACTCTG
GGCACGCCCGTCGAGAGCCGCTACGAGCCCAAGTCGGGGTCCATAACCGCCGGCACGCCC
GTACACCCGCACCTGCACGACAAGAAGTTCGACCAGTACTACAAGCGGCGCAGTCCCGGC
GGACCCGCTTACTACGCCACGCAGCCTCGCCCGCAGTCACCCTCCTTCTCACAGTCCGGC
AGCAGTTACGGTCGCAACCCGCACGTCCTAGAGCAGCGTTCGATCATAATGGCGGACTTC
ATCACGTCGCAGCAGATGCACGCCGGCGCGAGACGCGAGCGCGCCGACACGGACTACCCG
CCGGCACATCCGCAGGCGCAGCACCAATCGCAGATCCCGGCGGTGTTGCCGACGTCGCAC
CCGGCGGCGCACCCGGCGCAGCACTCCGCCGGGCACCCCGCGCAGCACTACTCGCGCCGG
GAGCCCGTGTCTGTTATACAGCGCCACACGGCGGGACACGGACTCTATCCGCACCATCCG
CCGCCAGGTCACGAAGCATTTACATCGTTAGTGAACGTGGCATCAGCTGCGACGGCGCTG
CCCGTGCCCGGAGGAGAACCCAAACCCGACGCCAAGACACAACAGCACCACTCCACGCAT
GATGTCAGATTACGAGATTTAGGGATGTCTCAGAAATACCACAGTATACCTCAATATCAG
GTGATCGATAGAAGAACGAAACAACAACAATACAATATGGAAAGAGACATTCAGATCGCT
ATGCAACAGAGAAGAGAGAGTGATCGACCGTTGGAGAGGCACGAATCTCATTCAGCGCAT
CCACAACTGATTCACGAAAGACATCTACTGCCGCATGTACAGAACGTATCGTCTCAAGAG
AGTAGACTAGTAACATCTGGCACGTACAGCACCGCCAAGCATCGCTCGCAGACGCCGCAC
TATCTCGACGCAAGGCTCACCAAGTCTGAAATTCGCGCGGCGGTATCGTCAGCCCTGGCG
AGCGGCGCGGCGGCGGGCGTGGCGAGCGCGGCGGGCGTGGCGGGCGCGGCACAGGACCGC
TCGGGCAAGCTCACCGCCGCCTCGCTTATCGACGCCATCATCACGCACCAGATCAACCAG
ACTTCCGATCAACGATTCCCGCAACAAGGTGTACGTGAGTGCGACAACGGTGGCGTAGTG
GGCGTGGCGGGTGTGGGCGTGGCTGGTGTGGCCGGGCTGGAGCGCGGGCACGGCGGTGCG
GGGGCGGGGGTGGAGGACTTGGCGCACAAGACCAGCTTCAAGCTAGGAGACCTCGCCTCC
AACATTATCACGCGGGACTACCTCGCGCCCTCCGCCGCCCTGCTACAACAACACAACAGT
CGATTTCCTTCGGTGTCGAGTTCAGAGTCGTACAACCCGAGTGTGAGCTCGCACCTGAGC
GTGTCCAGCTCCATGGACGAGTGGAAGCGGCGCGACGCCTCCAACCGCGTGCCTTACCTC
GAGCCCGTCTCGCCGCCGGACAACCACCACTCCAACCATCATGTTAACAGGAGTAGTAGC
AATACAAGCAGTAGCGTGGTGAGCAGCGTGGCCGGTGGCGGCGGCGGTGGGGGCGGTAGT
GGCGGCGGCAGCAGTAGCGGCGGCGCGGCG
(5790 bp)

- SilkBase 1999-2023 -