SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp27153_c0_seq3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_tRNA_pseudouridine_synthase_A,_mitochondrial-like_isoform_X2_[Papilio_xuthus]
Ontology
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0004730 F pseudouridylate synthase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0044822 F RNA binding
GO:0070902 P mitochondrial tRNA pseudouridine synthesis
Transcript
Level		FPKM:3.98 TPM:3.35
ORF EntryO_TrvaMG16709_complete:A_TrvaMG_comp27153_c0_seq3
Sequence
(Nucleotide)
GTATTTTGAACTTTATTTAAATCTAGTCTCATGAACTTTGTAAACTACGTTTCTTGCAGC
GGTCACGGTAGTGAAACAAATATTGTGATTTACTCTGAACTGTGTAGATAAAAGCTTTAT
AGTATCGTCAAACGTACGCGGATTTTCCACCATGGAGGTCGCTACAGAGATCAAAGAAGA
TGAAAAATTACCAATAGTTCCTGATAAAGTCCTAACAAGATATAACAAACGTCGTATGAA
CAGACAATGGGAAGAGAAAGCGGAAGGTGAAAATGACGCTAAGAAACCATACGAAAGAAT
TAAAAGAAAAAAAATGGCCATGCTGTTGGGATACTCTGGAGTTGACTATTATGTAATCCT
GGAGTAAGAACAATAGAAGAAGAATTACTAAAAGCATTATTAGATGCCAAATACATAACG
CAAGAGGATTTTGATAATGCGCAAAATGCACAGTTTCAACGGAGCTCGAGAACCGATAAG
GGTGTGTCAGCGGCCCAGCAAGTTGTCTCACTTAAATTACCTCTCGAAGTAAATGTAGAA
GAAATAAACAAAAGACTTCCAGAAACTATCAAAGTATTTGGAGTAAAAAGAGTGACAAAC
AGATTCAATTGTAAATCGAAATGCAACGCTCGATCATATAGCTATACTCTTCCCACATAC
ACGCTGGAACCTAGTTTAGTGACCGTGGAAGAGAGAAGGAAATATAGGATTCCGGCTGAT
AAAATAGAAAAGTTGAATAGTATACTTGAAGTTTACAAAGGTACTAGGAGTTATCATAAT
TTTACGGAGAAAAAACACCATCAAGACCCATCATCTTCAAGGTACATGATGAGTTTTACT
GTGGAAAGAGTTTTTGTTCACTCTGATATGGAATTTGCAGTTTTAATTGTTAAGGGTCAA
AGTTTCATGCTGCATCAGATAAGGAAAATGGTTGGGTTAGCGATAGCAGTGATGAGGGGT
TACGTTGACTCCTCGATCATGGAGAAGGCTTTCGGTAAAGACAAGGTCATGATACCGACA
GCCCCTGGATTAGGCCTGGTTTTGGACAAAGTCCATTACGATAGATACGACGCGCGTCAT
AAAACAACCCACGACAGTCTTACTTGGGACAAGGAAGAAGAAAGCATACAAAAGTTCAAA
GACGAACACATTTATCCTAACATTGTGAAAGGGGAAATAGAAAGGGATTCCATGGGTCTG
TGGTTAGAGAAACTTGTTAGGCATTCCTATGAACCGACTGAAGAACAACTTCAAGCTGAA
AAAACTGCAGAAAATGATGATGATGACGATGATGACACTGATGATAAAGTTCCTGAAAAA
TGTAGTGATGAAGCTGTACCTGAAAAACTGAGTGATGATACTGTTGAAAAGCAAAGTGAT
GAAACTGTCGGAAAACAGTGATGAAACTGTTGAAAAACCTAGTGATAAAATTGGTGAAAA
AAGTGATGTTTCATTGGATAGTGTGAAAAATACGTCATAGTTGTTTAAGAAATTATTTCA
GATTTGTTTTAATAGATATATTGAATTGTTGTATAAAATATTCGATGGGAATATGACAAG
ATTAATACTATTATAATTAAAAAAAAAA
(1588 bp)

- SilkBase 1999-2023 -