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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp27141_c0_seq4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:5.02 TPM:4.23
ORF EntryO_TrvaMG16592_3prime_partial:A_TrvaMG_comp27141_c0_seq4
Sequence
(Nucleotide)
TGGATTGAAACGAAATACTTATTGAAAATAACTCTGGAAACGTTTTGTCCTTGATGTGTC
ATCCATTTCAATTAGTATTTTAACCAAACGTGAAACTCGTGAAACACGGGAAATAAACCA
AATTACTCGACAGTGCATAATTGACATTCGTGCGTTGTAAGTGTAGTGTGACGAATAGTG
CGGGACGAGTAGGTAGTGTGTGATGTTGTATTGATAAAGTGCAGTGGGTGAGTGAATGCA
GAGGCAGCGTTGCAGCGCTCGCCCTGGCATGCTGCCGGGCAGGTAGCGCGCGCGGGCGGC
CTGCGCAGGCCCCACACCAGCAGTTGCGAGTCTTCCCCAACGTCGTCTATGGCCGAGCAA
CACACCACACCGTCGTCGCACTCTGCACTCACGAGAGAGTCCAGCCGGTCTTCTCCTAGC
AGGGTGGTGGGCGGTCGGTGGTTGCGACGAGTTCGTCGAGCAAGCCACGGCCGTCGGAAC
AGACGCTACGTGACATCGCCTTTGCCGCGCTCCACAAGCCGACATTCCTCTAACCGCGGC
TCCGACGTAGATTCCCACGTCGAACTACGTAGAAGCTCACGGCTCATCAATTCACTACCT
CGATCTGATTATTCCGTTACCGAGCGCTGGTCATACGGCACTGACGTTTACGAAACAAGG
TGTGATACCTCGCATCATAAGAGCGGAGATTCCAAAACTTCGAGTACACACGCAAAACGT
AGACGCACTTCTTCGCATGACCGAAAAAAACAAAAAGTCAAATCGAACAATAGTACAGAA
GAGTGCATTGCACATTGTACACGCTCACGGACTGCTCTTAAAACAACAGAGAGTGTTTGT
GAGCAAACTCCGAACTCTTTACCACCAGTATCGACTAACCAAAGTACCGCAGTAGCTCAA
GCGCAACCAAATACCTCTGAAGGTGGCTTACTACCTTTAGACGAAAGAGACTTTGCTTAT
TCACCGTTTAGTTCATCAACCGTCACAGATCTTATTGATTCGGATTATTCAGTGTACAGT
CCTACAACAAGTCGCAGAAAAGGCAAAAAGCGAAAACGATCTCATCATCGTTCTTTGTCA
AGCAGAAAGAACAGTTATTTGGCAGGGATTGAAGATTACAAGAAAAGGGTAAAAATAGAG
CCTACCGAAATCAGCGAACCTCATAAAACACCGAAGAACGAATCAGAAAAAGTAGAGAGC
ACTACACCACAGACTCCTTGTACATATTTATTACGGAATAGACATCATCGTGACCTCGGA
GCACCCACCTCGACAGTCATTAGTGAGAACGCAGCGAGCCTGGCAACCAGCGACGCTGCT
CACAAGAAAACTAACACCGAACATAAGAATACCACAGAGGGTAGAACCATATCACCTCCG
CCATACAGAGATCTACAAGAAGCGAGTTCATCAAAGGCACAGAACAGTGGAAGCAAACTG
CTGATTGTTCCACGTGACCTGCCGTATCTACGTCAAACTAACGCTCGGAGGAGTATTGCA
GCTGCGACGGGGGCTACTTTGGGAGCTTGCCTGACGCGGGGAGCCTCGAGCACTCAGCGA
CAGAGGCAGGATACGACCTCAAAGAGACAGGTAGCGAGCGAGGGCGCGGCGAGCAGCAGC
GCGGCGGCGGGCAGGCGAGCGCGGGCTCGCGACATGCCGCAGCCGCAACCACCCTCTACT
CGGAAAGAAAAACGAGGCAAAACCAGTCTGGGTTCGTGTGCCAGTACTGGAGGTGCAACC
AGCCGCTCCCACGCCCAGCCTTTAACCACGGGTGCTGTAGCATCAACGTCGACCACACCG
CCAGCGCAAGCCGCAGCAGTCTCGATGCCTGATAATGCTGCAAGTGACGTCAAGCCTAAA
GGCATGACGTCAGGCGAGGAGTGCGGTGTGGGGGGCGCGGGCGGCGCGGTGGGAGGCGGC
GCGGGGGTCGCGGGAGTGGCGGCAGCGCTAGGAGAGGAGTCCTCGTCCGAGGAGGGCGAG
GTGGGCCGGCTGCAGGCGCTACTGGAGGCGCGCGGGTTGCCGCCGCATCTACTGGGCGCG
CTCGGACCGCGCATGCAACATCTCTTGCACAGAACTGTCACTGCTAACTCAGCTGCATCT
AAAGCAGCTCAGTTGCTCGCCGGTCTGCAAGCGACAGGCGACGAAGGTCAACAACTGCAA
GCCGTGATCGAAATGTGCCAGCTGCTGGTGATGGGTAACGAGGACACGCTCGCCGGATTC
CCTGTCCGACAAGTCGTACCCGCACTCGTCAATCTGCTCGCCGCTGAACATAACTTTGAT
ATGATGAACCACGCGTGCCGCGCTCTGACGTACATGCTGGAGGCGCTCCCCCGCAGCAGC
GGCGCCGTGGCGCTGGCCGTGCCCGCCTTCCTCGACAAGCTGCAGGCCATCACGTGCATG
GACGTCGCCGAGCAGAGCCTCACCGCGCTCGACATGCTCTCACGACGACACGCCAAGGCG
ATCCTGCAAGCTCGCGGCGTATCAGCTTGTTTGACATATCTGGATTTCTTCTCAATAAAT
GCTCAACGAGCAGCACTCTCCATAACTGCCAACTGTTGTCAAAATCTCACTGCAGATGAG
TTCCATCTCGTCAGAGAATCTCTACAATTACTTGCTAATAGACTGACCCAACAAGATAAG
AAATCGGTGGAATGCGTTTGCCTCGCATTCTCTCGTCTCGTGGATAGCTTCCAGCACGAT
CCGGCGCGGCTACAGGAAATTGCTACCCCAGAGCTGCTCACCAATCTTCAACAACTTTTG
GTGGTGCAGCCGCCGCTGATATCGGGCGCGACGTTCATCACGGTGCTGCGTCTGCTGTGG
GTGATGTGCGCGGCGTGTCCGCAGCTCGCGCTCGCGCTGCACCAGCGCTCCATCGCCGAC
ACGCTGCTCTGTCTGCTCACCGGCTCCACGCTACATCAGGAGCAAGTGGAGTTAATACCT
CGCTTACCACAAGAGCTGTACGAGATCACGTGTCTCATCGGCGAGCTGATGCCGCGGCTA
CCTACAGACGGGATCTTCACGGTGGACGCGCATCTCGACCGACCCTGGTCCACCGCTACT
GAACGCACCGCGCACTGGCAGTGGAGGGATGATAGAGGTGTTTGGCGTTCGTATTCATGG
GCAGAAAGCCGTGCTCTGGAAGCAGGTATGGCGGCGGGCGAGGAGGAGGTGTGCCTGAGC
ACGCTGGGCCGCTCCTACACCGTCGACCTCACCGCCATGCAGCAGCTCAACGAGCACACC
GGCACCGCGCGCCCCGTGCAGCGCCTCGCGCCGCCGCTCTCGCCGCAAGCCGCCGCCGCC
GCCGCAGCGCCAGATCCGCGTATAAGCATGGTGCGTTCGAATCCATCGTTGATTCGTGCA
TTGCTGGCCGTGCTCCACGAGGTGTACTGGAGCTCGGCGGGCCCGGCCGTGCGCTCGCAG
GCGCTTAAAGCTATACTTCGCTGTGTCTACTACGCCGACGCAACGCTACTGCGACAAGTA
CTCAAGATGCAGGTGATATCATCTCACATAGCGGGCATGATGGCGTCGAGCGACCTTCGC
ATAGTGGTGGGGTCGCTGCAGCTGGCCGAGATCCTGATGCAGCGGCTGCCGGACGAGATG
GCGGCTCAGTTCCGGCGCGAGGGCGTGCTGCACCAGGTCGCGCAGCTCGCCGCACCGCAC
ACCGCCACGCACGCCACCACCAACACGCAACAGAAGTCACCGAGCGGTCCCAGTACTCGT
TCAAGCGGTGCCGCATCCCCTCCCACGTCGTCATCCGCTTCGTTAGAACACAACAACCTC
ACCATGGCCTTCTCTGCGTCTGGTTCGTTTGTCGCCACTTCACTGCCAACAAGCAGTAGT
GACGTGAGCGGATCGGAGCCCGGGCCGGCGTCTGCTTCCACTCATCCGCAGCTACTGACC
GCAGTGCACAGATCGGGCAGTCCCCTGCAGCTGGCGGAGATGTTGAAGCGCAAGCGTGCC
ATCAAGCGGAGCGGCGCCACGGGCGGGCGACACGGCCGGCGCCGGGACGATGCCGCGCCC
GCCTCGAATCATGCACCATCGCCGCACGGAGCGAGTAGTTCAGGCGGCGGTCGTGGTTCG
AGCGGTCGTCCCAGCGGCGCGTCCAAGACTGCTTCGTTCCTCTCGTCGCTGAACCCGTCC
CGCTGGGGCCGCGCGCCGCACCAACACAAAGATACTGCGCTCCTTGCATCGCCGCATGCT
ACTGCCAACCTCACTGTGCAGAACAAAGAGAAAGTCCGCGAGTGGATATCGTGGTCGGCT
CGTCGCCTGCGTTGCGAGTGGGGCGCTCTGGGCGGCGGCGCAGGTGCGTTGGAACAGCTC
GGTGCGCTCGCAGCCGCCCTGCCGCACGCCGCGCACGCACGCGCCGCACTCGCGCACCTC
CGCGACACGCTACTCAACCACGATGTCTCGCCCTTCGAGGTGAATCATTCAGGAGTGCTC
AGCGCCCTGCATCAGTATTTGACCGGGTATGACCTGGAAGCGGAGGGCTCGGAGAAGCGC
GAAGGTGAAGCCCCGGCTCCGGAGTCGGCGGATCTCGTGCAGGCGTGTGAAGAGAGACTG
AGAGTGTTCTTACACGTTTTTGCTGAAATGCCCATTGAGCCTGAGGTGAACGATTGGAAA
GAGTCGATAGGTAACAGCAGCGCGCTGTGTGCGTTGGTCGCGAAGGTGAACGCGTGCGTG
TCTCACCTGGAACAGTTCCCGGTGCGAGTACACGACCTGCCCGCGCGGCCCGCCACCTCC
GCACTCAAGTTCTTCAACACTCATCAACTCATGTGTGATCTCAAACGTCATCCTTCATGC
AACACTTTGAAGCAATGGAAGGGTGGTGTAGTACGAATAGACCCATTAGCTTTAGTTCAA
GCCATAGAGAGATACCTGGCGCAGCGCGGCTACGCCCAGGGTCGCACGCGGTCGGACTCG
GCGGGCGCGCACTCGGACGACGAGCCCGCCTCCGACGACGACGTCGAGGACGCACTGCCC
GCCCCGCCGCAACCCACCAACGATTCTGAACACAAACTCGAGTTCCTAATAGGCGATACC
GTTCTGCCATACAACATGACCGTGTATCAAGCGGTGCGACAATTTGGCGAACAAAATGAC
GCCGACACTGATACTGAAACTCCATTGGCCAATGCAGGGATATGGGTCCAAACACACACA
ATATACTATCGAGCAGTAGAACCGAATGATCAACCGCGTTCTGAAAGCACACCATCAAAG
AAAGGCAAAGGACAACCTACAAAGATCTCATCTAGACGGAAACCTGATTTACTTTGGAAT
GAGGGCATGGTGCCGCGTCGTTCGTCTCCG
(5310 bp)

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