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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp27141_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:1.86 TPM:1.56
ORF EntryO_TrvaMG16585_3prime_partial:A_TrvaMG_comp27141_c0_seq1
Sequence
(Nucleotide)
CAGATTTACAGCTGTTTAGTGATTTGTTCGATTTCAAGTGTCTACCTTCATAAAATTAGT
GGTTTTACAACATTCGATTGAGAAAATTCTAGTGTTATTATAATTTACTAACATTGAAAA
ACACAAAAGTGAAGTGAACTCAACAATCAGTTTCAGAACTAAACAATCTACAGCAAAATT
CGATTACTCGACAGTGCATAATTGACATTCGTGCGTTGTAAGTGTAGTGTGACGAATAGT
GCGGGACGAGTAGGTAGTGTGTGATGTTGTATTGATAAAGTGCAGTGGGTGAGTGAATGC
AGAGGCAGCGTTGCAGCGCTCGCCCTGGCATGCTGCCGGGCAGGTAGCGCGCGCGGGCGG
CCTGCGCAGGCCCCACACCAGCAGTTGCGAGTCTTCCCCAACGTCGTCTATGGCCGAGCA
ACACACCACACCGTCGTCGCACTCTGCACTCACGAGAGAGTCCAGCCGGTCTTCTCCTAG
CAGGGTGGTGGGCGGTCGGTGGTTGCGACGAGTTCGTCGAGCAAGCCACGGCCGTCGGAA
CAGACGCTACGTGACATCGCCTTTGCCGCGCTCCACAAGCCGACATTCCTCTAACCGCGG
CTCCGACGTAGATTCCCACGTCGAACTACGTAGAAGCTCACGGCTCATCAATTCACTACC
TCGATCTGATTATTCCGTTACCGAGCGCTGGTCATACGGCACTGACGTTTACGAAACAAG
GTGTGATACCTCGCATCATAAGAGCGGAGATTCCAAAACTTCGAGTACACACGCAAAACG
TAGACGCACTTCTTCGCATGACCGAAAAAAACAAAAAGTCAAATCGAACAATAGTACAGA
AGAGTGCATTGCACATTGTACACGCTCACGGACTGCTCTTAAAACAACAGAGAGTGTTTG
TGAGCAAACTCCGAACTCTTTACCACCAGTATCGACTAACCAAAGTACCGCAGTAGCTCA
AGCGCAACCAAATACCTCTGAAGGTGGCTTACTACCTTTAGACGAAAGAGACTTTGCTTA
TTCACCGTTTAGTTCATCAACCGTCACAGATCTTATTGATTCGGATTATTCAGTGTACAG
TCCTACAACAAGTCGCAGAAAAGGCAAAAAGCGAAAACGATCTCATCATCGTTCTTTGTC
AAGCAGAAAGAACAGTTATTTGGCAGGGATTGAAGATTACAAGAAAAGGGTAAAAATAGA
GCCTACCGAAATCAGCGAACCTCATAAAACACCGAAGAACGAATCAGAAAAAGTAGAGAG
CACTACACCACAGACTCCTTGTACATATTTATTACGGAATAGACATCATCGTGACCTCGG
AGCACCCACCTCGACAGTCATTAGTGAGAACGCAGCGAGCCTGGCAACCAGCGACGCTGC
TCACAAGAAAACTAACACCGAACATAAGAATACCACAGAGGGTAGAACCATATCACCTCC
GCCATACAGAGATCTACAAGAAGCGAGTTCATCAAAGGCACAGAACAGTGGAAGCAAACT
GCTGATTGTTCCACGTGACCTGCCGTATCTACGTCAAACTAACGCTCGGAGGAGTATTGC
AGCTGCGACGGGGGCTACTTTGGGAGCTTGCCTGACGCGGGGAGCCTCGAGCACTCAGCG
ACAGAGGCAGGATACGACCTCAAAGAGACAGGTAGCGAGCGAGGGCGCGGCGAGCAGCAG
CGCGGCGGCGGGCAGGCGAGCGCGGGCTCGCGACATGCCGCAGCCGCAACCACCCTCTAC
TCGGAAAGAAAAACGAGGCAAAACCAGTCTGGGTTCGTGTGCCAGTACTGGAGGTGCAAC
CAGCCGCTCCCACGCCCAGCCTTTAACCACGGGTGCTGTAGCATCAACGTCGACCACACC
GCCAGCGCAAGCCGCAGCAGTCTCGATGCCTGATAATGCTGCAAGTGACGTCAAGCCTAA
AGGCATGACGTCAGGCGAGGAGTGCGGTGTGGGGGGCGCGGGCGGCGCGGTGGGAGGCGG
CGCGGGGGTCGCGGGAGTGGCGGCAGCGCTAGGAGAGGAGTCCTCGTCCGAGGAGGGCGA
GGTGGGCCGGCTGCAGGCGCTACTGGAGGCGCGCGGGTTGCCGCCGCATCTACTGGGCGC
GCTCGGACCGCGCATGCAACATCTCTTGCACAGAACTGTCACTGCTAACTCAGCTGCATC
TAAAGCAGCTCAGTTGCTCGCCGGTCTGCAAGCGACAGGCGACGAAGGTCAACAACTGCA
AGCCGTGATCGAAATGTGCCAGCTGCTGGTGATGGGTAACGAGGACACGCTCGCCGGATT
CCCTGTCCGACAAGTCGTACCCGCACTCGTCAATCTGCTCGCCGCTGAACATAACTTTGA
TATGATGAACCACGCGTGCCGCGCTCTGACGTACATGCTGGAGGCGCTCCCCCGCAGCAG
CGGCGCCGTGGCGCTGGCCGTGCCCGCCTTCCTCGACAAGCTGCAGGCCATCACGTGCAT
GGACGTCGCCGAGCAGAGCCTCACCGCGCTCGACATGCTCTCACGACGACACGCCAAGGC
GATCCTGCAAGCTCGCGGCGTATCAGCTTGTTTGACATATCTGGATTTCTTCTCAATAAA
TGCTCAACGAGCAGCACTCTCCATAACTGCCAACTGTTGTCAAAATCTCACTGCAGATGA
GTTCCATCTCGTCAGAGAATCTCTACAATTACTTGCTAATAGACTGACCCAACAAGATAA
GAAATCGGTGGAATGCGTTTGCCTCGCATTCTCTCGTCTCGTGGATAGCTTCCAGCACGA
TCCGGCGCGGCTACAGGAAATTGCTACCCCAGAGCTGCTCACCAATCTTCAACAACTTTT
GGTGGTGCAGCCGCCGCTGATATCGGGCGCGACGTTCATCACGGTGCTGCGTCTGCTGTG
GGTGATGTGCGCGGCGTGTCCGCAGCTCGCGCTCGCGCTGCACCAGCGCTCCATCGCCGA
CACGCTGCTCTGTCTGCTCACCGGCTCCACGCTACATCAGGAGCAAGTGGAGTTAATACC
TCGCTTACCACAAGAGCTGTACGAGATCACGTGTCTCATCGGCGAGCTGATGCCGCGGCT
ACCTACAGACGGGATCTTCACGGTGGACGCGCATCTCGACCGACCCTGGTCCACCGCTAC
TGAACGCACCGCGCACTGGCAGTGGAGGGATGATAGAGGTGTTTGGCGTTCGTATTCATG
GGCAGAAAGCCGTGCTCTGGAAGCAGGTATGGCGGCGGGCGAGGAGGAGGTGTGCCTGAG
CACGCTGGGCCGCTCCTACACCGTCGACCTCACCGCCATGCAGCAGCTCAACGAGCACAC
CGGCACCGCGCGCCCCGTGCAGCGCCTCGCGCCGCCGCTCTCGCCGCAAGCCGCCGCCGC
CGCCGCAGCGCCAGATCCGCGTATAAGCATGGTGCGTTCGAATCCATCGTTGATTCGTGC
ATTGCTGGCCGTGCTCCACGAGGTGTACTGGAGCTCGGCGGGCCCGGCCGTGCGCTCGCA
GGCGCTTAAAGCTATACTTCGCTGTGTCTACTACGCCGACGCAACGCTACTGCGACAAGT
ACTCAAGATGCAGGTGATATCATCTCACATAGCGGGCATGATGGCGTCGAGCGACCTTCG
CATAGTGGTGGGGTCGCTGCAGCTGGCCGAGATCCTGATGCAGCGGCTGCCGGACGAGAT
GGCGGCTCAGTTCCGGCGCGAGGGCGTGCTGCACCAGGTCGCGCAGCTCGCCGCACCGCA
CACCGCCACGCACGCCACCACCAACACGCAACAGAAGTCACCGAGCGGTCCCAGTACTCG
TTCAAGCGGTGCCGCATCCCCTCCCACGTCGTCATCCGCTTCGTTAGAACACAACAACCT
CACCATGGCCTTCTCTGCGTCTGGTTCGTTTGTCGCCACTTCACTGCCAACAAGCAGTAG
TGACGTGAGCGGATCGGAGCCCGGGCCGGCGTCTGCTTCCACTCATCCGCAGCTACTGAC
CGCAGTGCACAGATCGGGCAGTCCCCTGCAGCTGGCGGAGATGTTGAAGCGCAAGCGTGC
CATCAAGCGGAGCGGCGCCACGGGCGGGCGACACGGCCGGCGCCGGGACGATGCCGCGCC
CGCCTCGAATCATGCACCATCGCCGCACGGAGCGAGTAGTTCAGGCGGCGGTCGTGGTTC
GAGCGGTCGTCCCAGCGGCGCGTCCAAGACTGCTTCGTTCCTCTCGTCGCTGAACCCGTC
CCGCTGGGGCCGCGCGCCGCACCAACACAAAGATACTGCGCTCCTTGCATCGCCGCATGC
TACTGCCAACCTCACTGTGCAGAACAAAGAGAAAGTCCGCGAGTGGATATCGTGGTCGGC
TCGTCGCCTGCGTTGCGAGTGGGGCGCTCTGGGCGGCGGCGCAGGTGCGTTGGAACAGCT
CGGTGCGCTCGCAGCCGCCCTGCCGCACGCCGCGCACGCACGCGCCGCACTCGCGCACCT
CCGCGACACGCTACTCAACCACGATGTCTCGCCCTTCGAGGTGAATCATTCAGGAGTGCT
CAGCGCCCTGCATCAGTATTTGACCGGGTATGACCTGGAAGCGGAGGGCTCGGAGAAGCG
CGAAGGTGAAGCCCCGGCTCCGGAGTCGGCGGATCTCGTGCAGGCGTGTGAAGAGAGACT
GAGAGTGTTCTTACACGTTTTTGCTGAAATGCCCATTGAGCCTGAGGTGAACGATTGGAA
AGAGTCGATAGGTAACAGCAGCGCGCTGTGTGCGTTGGTCGCGAAGGTGAACGCGTGCGT
GTCTCACCTGGAACAGTTCCCGGTGCGAGTACACGACCTGCCCGCGCGGCCCGCCACCTC
CGCACTCAAGTTCTTCAACACTCATCAACTCATGTGTGATCTCAAACGTCATCCTTCATG
CAACACTTTGAAGCAATGGAAGGGTGGTGTAGTACGAATAGACCCATTAGCTTTAGTTCA
AGCCATAGAGAGATACCTGGCGCAGCGCGGCTACGCCCAGGGTCGCACGCGGTCGGACTC
GGCGGGCGCGCACTCGGACGACGAGCCCGCCTCCGACGACGACGTCGAGGACGCACTGCC
CGCCCCGCCGCAACCCACCAACGATTCTGAACACAAACTCGAGTTCCTAATAGGCGATAC
CGTTCTGCCATACAACATGACCGTGTATCAAGCGGTGCGACAATTTGGCGAACAAAATGA
CGCCGACACTGATACTGAAACTCCATTGGCCAATGCAGGGATATGGGTCCAAACACACAC
AATATACTATCGAGCAGTAGAACCGAATGATCAACCGCGTTCTGAAAGCACACCATCAAA
GAAAGGCAAAGGACAACCTACAAAGATCTCATCTAGACGGAAACCTGATTTACTTTGGAA
TGAGGGCATGGTGCCGCGTCGTTCGTCTCCG
(5371 bp)

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